Hb_001923_010

Information

Type -
Description -
Location Contig1923: 16335-29779
Sequence    

Annotation

kegg
ID fve:101310574
description outer envelope protein 80, chloroplastic-like
nr
ID XP_012066349.1
description PREDICTED: outer envelope protein 80, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9C5J8
description Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana GN=OEP80 PE=2 SV=1
trembl
ID A0A067L6U1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23905 PE=4 SV=1
Gene Ontology
ID GO:0019867
description chloroplast outer membrane family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001923_010 0.0 - - PREDICTED: outer envelope protein 80, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000072_080 0.0910612562 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
3 Hb_001141_030 0.0970491849 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
4 Hb_001141_280 0.1031357312 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
5 Hb_012753_160 0.1038932268 - - ara4-interacting protein, putative [Ricinus communis]
6 Hb_000479_010 0.1119670708 - - PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]
7 Hb_034406_020 0.1122093231 - - PREDICTED: jmjC domain-containing protein 7 [Jatropha curcas]
8 Hb_003203_040 0.1137794682 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
9 Hb_143766_050 0.1146077889 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
10 Hb_021409_030 0.1151552672 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
11 Hb_003994_040 0.1162214437 - - -
12 Hb_000329_310 0.1163372047 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
13 Hb_001862_100 0.1163834963 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
14 Hb_003455_040 0.1164238408 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
15 Hb_138585_060 0.1172290176 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
16 Hb_000239_010 0.1177141077 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_009486_130 0.1179274819 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
18 Hb_001109_020 0.1192740944 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001143_080 0.1201948893 - - PREDICTED: F-box protein 7 [Jatropha curcas]
20 Hb_019654_090 0.1208158651 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]

Gene co-expression network

sample Hb_001923_010 Hb_001923_010 Hb_000072_080 Hb_000072_080 Hb_001923_010--Hb_000072_080 Hb_001141_030 Hb_001141_030 Hb_001923_010--Hb_001141_030 Hb_001141_280 Hb_001141_280 Hb_001923_010--Hb_001141_280 Hb_012753_160 Hb_012753_160 Hb_001923_010--Hb_012753_160 Hb_000479_010 Hb_000479_010 Hb_001923_010--Hb_000479_010 Hb_034406_020 Hb_034406_020 Hb_001923_010--Hb_034406_020 Hb_000072_080--Hb_012753_160 Hb_002235_280 Hb_002235_280 Hb_000072_080--Hb_002235_280 Hb_138585_060 Hb_138585_060 Hb_000072_080--Hb_138585_060 Hb_021409_030 Hb_021409_030 Hb_000072_080--Hb_021409_030 Hb_001143_080 Hb_001143_080 Hb_000072_080--Hb_001143_080 Hb_000120_680 Hb_000120_680 Hb_000072_080--Hb_000120_680 Hb_003203_040 Hb_003203_040 Hb_001141_030--Hb_003203_040 Hb_001109_020 Hb_001109_020 Hb_001141_030--Hb_001109_020 Hb_001141_030--Hb_001143_080 Hb_003455_040 Hb_003455_040 Hb_001141_030--Hb_003455_040 Hb_001141_030--Hb_012753_160 Hb_003994_040 Hb_003994_040 Hb_001141_030--Hb_003994_040 Hb_009666_040 Hb_009666_040 Hb_001141_280--Hb_009666_040 Hb_001829_060 Hb_001829_060 Hb_001141_280--Hb_001829_060 Hb_003018_190 Hb_003018_190 Hb_001141_280--Hb_003018_190 Hb_001862_100 Hb_001862_100 Hb_001141_280--Hb_001862_100 Hb_000239_010 Hb_000239_010 Hb_001141_280--Hb_000239_010 Hb_001141_280--Hb_001109_020 Hb_012675_060 Hb_012675_060 Hb_012753_160--Hb_012675_060 Hb_001140_060 Hb_001140_060 Hb_012753_160--Hb_001140_060 Hb_001998_050 Hb_001998_050 Hb_012753_160--Hb_001998_050 Hb_012753_160--Hb_003455_040 Hb_000574_480 Hb_000574_480 Hb_012753_160--Hb_000574_480 Hb_000479_010--Hb_001140_060 Hb_008300_010 Hb_008300_010 Hb_000479_010--Hb_008300_010 Hb_000479_010--Hb_012753_160 Hb_006031_020 Hb_006031_020 Hb_000479_010--Hb_006031_020 Hb_011867_010 Hb_011867_010 Hb_000479_010--Hb_011867_010 Hb_000479_010--Hb_021409_030 Hb_034406_020--Hb_021409_030 Hb_000258_170 Hb_000258_170 Hb_034406_020--Hb_000258_170 Hb_034406_020--Hb_000072_080 Hb_007044_060 Hb_007044_060 Hb_034406_020--Hb_007044_060 Hb_001287_030 Hb_001287_030 Hb_034406_020--Hb_001287_030 Hb_019654_090 Hb_019654_090 Hb_034406_020--Hb_019654_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.07786 1.83298 3.09661 2.13454 6.45978 8.19961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.62232 21.0725 17.6864 4.28986 4.40123

CAGE analysis