Hb_001926_010

Information

Type -
Description -
Location Contig1926: 4498-5580
Sequence    

Annotation

kegg
ID csv:101232409
description glutamate receptor 2.5-like
nr
ID KGN63020.1
description hypothetical protein Csa_2G383910 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID W5FY31
description Uncharacterized protein (Fragment) OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19188: 4804-5630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001926_010 0.0 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
2 Hb_001921_040 0.0619943243 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
3 Hb_000282_010 0.0696818457 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002235_260 0.0736114859 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
5 Hb_001123_340 0.07719323 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
6 Hb_019762_030 0.0775085825 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
7 Hb_004117_060 0.0789155249 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
8 Hb_000436_110 0.0815091114 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
9 Hb_088118_010 0.0852429045 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
10 Hb_000187_100 0.0874807623 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
11 Hb_003226_040 0.0891760144 - - PREDICTED: endoglucanase 17 [Populus euphratica]
12 Hb_031862_190 0.0921133184 - - -
13 Hb_005198_010 0.0921819138 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
14 Hb_089736_010 0.0928043642 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
15 Hb_000853_340 0.0947031884 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
16 Hb_008165_010 0.0952887007 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
17 Hb_000243_180 0.0956700415 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
18 Hb_063584_010 0.0967876574 - - hypothetical protein JCGZ_10530 [Jatropha curcas]
19 Hb_078954_020 0.0977139634 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
20 Hb_000023_030 0.1006587072 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]

Gene co-expression network

sample Hb_001926_010 Hb_001926_010 Hb_001921_040 Hb_001921_040 Hb_001926_010--Hb_001921_040 Hb_000282_010 Hb_000282_010 Hb_001926_010--Hb_000282_010 Hb_002235_260 Hb_002235_260 Hb_001926_010--Hb_002235_260 Hb_001123_340 Hb_001123_340 Hb_001926_010--Hb_001123_340 Hb_019762_030 Hb_019762_030 Hb_001926_010--Hb_019762_030 Hb_004117_060 Hb_004117_060 Hb_001926_010--Hb_004117_060 Hb_001921_040--Hb_002235_260 Hb_001921_040--Hb_004117_060 Hb_000243_180 Hb_000243_180 Hb_001921_040--Hb_000243_180 Hb_005198_010 Hb_005198_010 Hb_001921_040--Hb_005198_010 Hb_003226_040 Hb_003226_040 Hb_001921_040--Hb_003226_040 Hb_078954_020 Hb_078954_020 Hb_000282_010--Hb_078954_020 Hb_001218_060 Hb_001218_060 Hb_000282_010--Hb_001218_060 Hb_000282_010--Hb_001123_340 Hb_000282_010--Hb_001921_040 Hb_088118_010 Hb_088118_010 Hb_000282_010--Hb_088118_010 Hb_002235_260--Hb_004117_060 Hb_002235_260--Hb_019762_030 Hb_008165_010 Hb_008165_010 Hb_002235_260--Hb_008165_010 Hb_000023_030 Hb_000023_030 Hb_002235_260--Hb_000023_030 Hb_002235_260--Hb_005198_010 Hb_001123_340--Hb_001218_060 Hb_089736_010 Hb_089736_010 Hb_001123_340--Hb_089736_010 Hb_000187_100 Hb_000187_100 Hb_001123_340--Hb_000187_100 Hb_000264_160 Hb_000264_160 Hb_001123_340--Hb_000264_160 Hb_000853_340 Hb_000853_340 Hb_019762_030--Hb_000853_340 Hb_019762_030--Hb_005198_010 Hb_019762_030--Hb_004117_060 Hb_155874_020 Hb_155874_020 Hb_019762_030--Hb_155874_020 Hb_003702_010 Hb_003702_010 Hb_019762_030--Hb_003702_010 Hb_004117_060--Hb_000023_030 Hb_004117_060--Hb_008165_010 Hb_002045_020 Hb_002045_020 Hb_004117_060--Hb_002045_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.870235 67.1671 6.91875 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.016069 9.97089

CAGE analysis