Hb_001926_020

Information

Type -
Description -
Location Contig1926: 7311-21874
Sequence    

Annotation

kegg
ID rcu:RCOM_1012900
description glutamate receptor 2 plant, putative
nr
ID XP_012091712.1
description PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
swissprot
ID Q8LGN0
description Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3
trembl
ID A0A067JB61
description Glutamate receptor OS=Jatropha curcas GN=JCGZ_21517 PE=3 SV=1
Gene Ontology
ID GO:0016021
description glutamate receptor -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19189: 21322-21558 , PASA_asmbl_19190: 21590-21990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001926_020 0.0 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
2 Hb_074966_010 0.0553218535 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
3 Hb_059318_010 0.0703499569 - - glutamate receptor 2 plant, putative [Ricinus communis]
4 Hb_032731_010 0.0707020424 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
5 Hb_003777_120 0.0717675972 - - -
6 Hb_005888_050 0.0941981337 - - ATP binding protein, putative [Ricinus communis]
7 Hb_006188_020 0.0956618266 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
8 Hb_111997_010 0.0978311683 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
9 Hb_000343_050 0.1069868595 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001606_010 0.1131284174 - - kinase, putative [Ricinus communis]
11 Hb_000049_030 0.1177533801 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001926_070 0.1183698558 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
13 Hb_000002_370 0.1216613017 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
14 Hb_059429_010 0.1230359518 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
15 Hb_000243_290 0.1231452622 - - plastidic aldolase family protein [Populus trichocarpa]
16 Hb_008019_010 0.1239003988 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
17 Hb_005486_020 0.1262614745 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
18 Hb_000199_040 0.1289965096 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
19 Hb_002053_180 0.1297883597 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
20 Hb_004040_010 0.130441694 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]

Gene co-expression network

sample Hb_001926_020 Hb_001926_020 Hb_074966_010 Hb_074966_010 Hb_001926_020--Hb_074966_010 Hb_059318_010 Hb_059318_010 Hb_001926_020--Hb_059318_010 Hb_032731_010 Hb_032731_010 Hb_001926_020--Hb_032731_010 Hb_003777_120 Hb_003777_120 Hb_001926_020--Hb_003777_120 Hb_005888_050 Hb_005888_050 Hb_001926_020--Hb_005888_050 Hb_006188_020 Hb_006188_020 Hb_001926_020--Hb_006188_020 Hb_074966_010--Hb_059318_010 Hb_111997_010 Hb_111997_010 Hb_074966_010--Hb_111997_010 Hb_074966_010--Hb_003777_120 Hb_074966_010--Hb_032731_010 Hb_074966_010--Hb_005888_050 Hb_059318_010--Hb_032731_010 Hb_059318_010--Hb_003777_120 Hb_008019_010 Hb_008019_010 Hb_059318_010--Hb_008019_010 Hb_000049_030 Hb_000049_030 Hb_059318_010--Hb_000049_030 Hb_001926_070 Hb_001926_070 Hb_032731_010--Hb_001926_070 Hb_032731_010--Hb_003777_120 Hb_001606_010 Hb_001606_010 Hb_032731_010--Hb_001606_010 Hb_000199_040 Hb_000199_040 Hb_003777_120--Hb_000199_040 Hb_000002_370 Hb_000002_370 Hb_003777_120--Hb_000002_370 Hb_135714_010 Hb_135714_010 Hb_005888_050--Hb_135714_010 Hb_008202_010 Hb_008202_010 Hb_005888_050--Hb_008202_010 Hb_031685_010 Hb_031685_010 Hb_005888_050--Hb_031685_010 Hb_005888_050--Hb_006188_020 Hb_006188_020--Hb_111997_010 Hb_006188_020--Hb_074966_010 Hb_000343_050 Hb_000343_050 Hb_006188_020--Hb_000343_050 Hb_001677_170 Hb_001677_170 Hb_006188_020--Hb_001677_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.523365 1.52481 0.470148 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0126476 0.0571719 0.606967

CAGE analysis