Hb_001926_040

Information

Type -
Description -
Location Contig1926: 31318-34071
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05150g
description POPTRDRAFT_859008; hypothetical protein
nr
ID XP_012091710.1
description PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
swissprot
ID Q66JD1
description ATP synthase mitochondrial F1 complex assembly factor 1 OS=Xenopus tropicalis GN=atpaf1 PE=2 SV=1
trembl
ID A0A067JNF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21515 PE=4 SV=1
Gene Ontology
ID GO:0005739
description atp synthase mitochondrial f1 complex assembly factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19194: 31652-33966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001926_040 0.0 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
2 Hb_005843_110 0.1223550865 - - Caltractin, putative [Ricinus communis]
3 Hb_003025_090 0.125582655 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
4 Hb_004206_010 0.1292175359 - - PREDICTED: uncharacterized protein LOC103321196 [Prunus mume]
5 Hb_000046_300 0.1297968679 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
6 Hb_000666_110 0.1307298024 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
7 Hb_000417_180 0.1318692235 - - 60S ribosomal protein L11, putative [Ricinus communis]
8 Hb_000107_390 0.1339515975 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
9 Hb_001439_150 0.1343716281 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
10 Hb_027380_160 0.1349051545 - - -
11 Hb_000890_040 0.1352975397 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
12 Hb_010795_010 0.1355391718 - - protein with unknown function [Ricinus communis]
13 Hb_002973_080 0.1370029854 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
14 Hb_003682_050 0.1374052466 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
15 Hb_012508_030 0.140299907 - - PREDICTED: uncharacterized protein LOC105636284 [Jatropha curcas]
16 Hb_001934_030 0.1407873004 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
17 Hb_003297_030 0.14081789 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
18 Hb_007164_020 0.1411094285 - - hypothetical protein glysoja_025872 [Glycine soja]
19 Hb_000465_470 0.1416641505 - - unknown [Picea sitchensis]
20 Hb_000000_080 0.1430738352 - - lipoate-protein ligase B, putative [Ricinus communis]

Gene co-expression network

sample Hb_001926_040 Hb_001926_040 Hb_005843_110 Hb_005843_110 Hb_001926_040--Hb_005843_110 Hb_003025_090 Hb_003025_090 Hb_001926_040--Hb_003025_090 Hb_004206_010 Hb_004206_010 Hb_001926_040--Hb_004206_010 Hb_000046_300 Hb_000046_300 Hb_001926_040--Hb_000046_300 Hb_000666_110 Hb_000666_110 Hb_001926_040--Hb_000666_110 Hb_000417_180 Hb_000417_180 Hb_001926_040--Hb_000417_180 Hb_000107_390 Hb_000107_390 Hb_005843_110--Hb_000107_390 Hb_002997_170 Hb_002997_170 Hb_005843_110--Hb_002997_170 Hb_143766_090 Hb_143766_090 Hb_005843_110--Hb_143766_090 Hb_168918_020 Hb_168918_020 Hb_005843_110--Hb_168918_020 Hb_000141_060 Hb_000141_060 Hb_005843_110--Hb_000141_060 Hb_005843_110--Hb_000666_110 Hb_001913_010 Hb_001913_010 Hb_003025_090--Hb_001913_010 Hb_002399_010 Hb_002399_010 Hb_003025_090--Hb_002399_010 Hb_178968_110 Hb_178968_110 Hb_003025_090--Hb_178968_110 Hb_000179_210 Hb_000179_210 Hb_003025_090--Hb_000179_210 Hb_003929_260 Hb_003929_260 Hb_003025_090--Hb_003929_260 Hb_003297_030 Hb_003297_030 Hb_003025_090--Hb_003297_030 Hb_000165_030 Hb_000165_030 Hb_004206_010--Hb_000165_030 Hb_003609_040 Hb_003609_040 Hb_004206_010--Hb_003609_040 Hb_004206_010--Hb_000107_390 Hb_000172_370 Hb_000172_370 Hb_004206_010--Hb_000172_370 Hb_004206_010--Hb_002997_170 Hb_004206_010--Hb_000417_180 Hb_001439_150 Hb_001439_150 Hb_000046_300--Hb_001439_150 Hb_000046_300--Hb_000666_110 Hb_002024_040 Hb_002024_040 Hb_000046_300--Hb_002024_040 Hb_001511_020 Hb_001511_020 Hb_000046_300--Hb_001511_020 Hb_001357_090 Hb_001357_090 Hb_000046_300--Hb_001357_090 Hb_006065_020 Hb_006065_020 Hb_000046_300--Hb_006065_020 Hb_001504_150 Hb_001504_150 Hb_000666_110--Hb_001504_150 Hb_019962_030 Hb_019962_030 Hb_000666_110--Hb_019962_030 Hb_000666_110--Hb_000141_060 Hb_000538_020 Hb_000538_020 Hb_000666_110--Hb_000538_020 Hb_000905_190 Hb_000905_190 Hb_000666_110--Hb_000905_190 Hb_005503_030 Hb_005503_030 Hb_000666_110--Hb_005503_030 Hb_000017_120 Hb_000017_120 Hb_000417_180--Hb_000017_120 Hb_010863_080 Hb_010863_080 Hb_000417_180--Hb_010863_080 Hb_000417_180--Hb_000107_390 Hb_005527_050 Hb_005527_050 Hb_000417_180--Hb_005527_050 Hb_000417_180--Hb_003297_030 Hb_007426_230 Hb_007426_230 Hb_000417_180--Hb_007426_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6954 3.97675 5.33557 0.898009 11.8362 5.9345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.82581 7.78509 10.3495 1.54662 1.13139

CAGE analysis