Hb_001926_060

Information

Type -
Description -
Location Contig1926: 60844-64407
Sequence    

Annotation

kegg
ID rcu:RCOM_1012850
description hypothetical protein
nr
ID XP_012091705.1
description PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JB56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21512 PE=4 SV=1
Gene Ontology
ID GO:0006259
description negative regulator of systemic acquired isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001926_060 0.0 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
2 Hb_007058_020 0.0009791747 - - -
3 Hb_163180_010 0.0011037239 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_001248_160 0.0050269572 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
5 Hb_176760_010 0.0082058187 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
6 Hb_001136_150 0.008652468 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000130_430 0.0093758744 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
8 Hb_000330_010 0.014331407 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
9 Hb_086639_110 0.0144844131 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
10 Hb_008895_010 0.0165632799 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004324_180 0.0179055275 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000107_690 0.0187282288 - - zinc finger protein, putative [Ricinus communis]
13 Hb_003251_020 0.0189605888 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
14 Hb_158909_010 0.01968148 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_037000_010 0.0226718022 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
16 Hb_039046_010 0.0231227275 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
17 Hb_004957_040 0.0245118604 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
18 Hb_009615_140 0.0247685887 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
19 Hb_126871_010 0.0250824209 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
20 Hb_000172_040 0.025507979 - - Tetratricopeptide repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001926_060 Hb_001926_060 Hb_007058_020 Hb_007058_020 Hb_001926_060--Hb_007058_020 Hb_163180_010 Hb_163180_010 Hb_001926_060--Hb_163180_010 Hb_001248_160 Hb_001248_160 Hb_001926_060--Hb_001248_160 Hb_176760_010 Hb_176760_010 Hb_001926_060--Hb_176760_010 Hb_001136_150 Hb_001136_150 Hb_001926_060--Hb_001136_150 Hb_000130_430 Hb_000130_430 Hb_001926_060--Hb_000130_430 Hb_007058_020--Hb_163180_010 Hb_007058_020--Hb_001248_160 Hb_007058_020--Hb_176760_010 Hb_007058_020--Hb_001136_150 Hb_007058_020--Hb_000130_430 Hb_163180_010--Hb_001248_160 Hb_163180_010--Hb_001136_150 Hb_163180_010--Hb_000130_430 Hb_163180_010--Hb_176760_010 Hb_001248_160--Hb_001136_150 Hb_001248_160--Hb_000130_430 Hb_000330_010 Hb_000330_010 Hb_001248_160--Hb_000330_010 Hb_008895_010 Hb_008895_010 Hb_176760_010--Hb_008895_010 Hb_004324_180 Hb_004324_180 Hb_176760_010--Hb_004324_180 Hb_176760_010--Hb_001248_160 Hb_001136_150--Hb_000130_430 Hb_001136_150--Hb_000330_010 Hb_086639_110 Hb_086639_110 Hb_001136_150--Hb_086639_110 Hb_000130_430--Hb_000330_010 Hb_000130_430--Hb_086639_110 Hb_000107_690 Hb_000107_690 Hb_000130_430--Hb_000107_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0240007 0.0895662 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis