Hb_001930_050

Information

Type -
Description -
Location Contig1930: 49522-50670
Sequence    

Annotation

kegg
ID rcu:RCOM_0520780
description Serine acetyltransferase 3, mitochondrial precursor, putative (EC:2.3.1.30)
nr
ID XP_002522723.1
description Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
swissprot
ID Q39218
description Serine acetyltransferase 3, mitochondrial OS=Arabidopsis thaliana GN=SAT3 PE=1 SV=3
trembl
ID B9S9Q4
description Serine acetyltransferase 3, mitochondrial, putative OS=Ricinus communis GN=RCOM_0520780 PE=4 SV=1
Gene Ontology
ID GO:0005737
description serine acetyltransferase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19284: 49532-50869
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001930_050 0.0 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
2 Hb_006921_030 0.115158311 - - PREDICTED: uncharacterized protein LOC105638271 [Jatropha curcas]
3 Hb_002119_060 0.1151613162 transcription factor TF Family: Orphans histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
4 Hb_039837_010 0.1200046276 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
5 Hb_109092_010 0.1216515499 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
6 Hb_000204_040 0.1222886258 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
7 Hb_031089_010 0.1245027687 - - DNA binding protein, putative [Ricinus communis]
8 Hb_000245_130 0.1272934975 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
9 Hb_158092_070 0.1301570979 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
10 Hb_004221_010 0.1307715256 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
11 Hb_002375_020 0.1319323365 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
12 Hb_010172_080 0.1331143876 - - acetylglucosaminyltransferase, putative [Ricinus communis]
13 Hb_001124_210 0.1336522859 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002248_140 0.1366622229 - - acetylglucosaminyltransferase, putative [Ricinus communis]
15 Hb_002196_020 0.136803135 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_155375_010 0.1385468641 - - hypothetical protein JCGZ_23388 [Jatropha curcas]
17 Hb_004055_010 0.1387197498 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_141131_010 0.1394138546 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
19 Hb_002811_360 0.1396012379 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
20 Hb_000321_070 0.140393349 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001930_050 Hb_001930_050 Hb_006921_030 Hb_006921_030 Hb_001930_050--Hb_006921_030 Hb_002119_060 Hb_002119_060 Hb_001930_050--Hb_002119_060 Hb_039837_010 Hb_039837_010 Hb_001930_050--Hb_039837_010 Hb_109092_010 Hb_109092_010 Hb_001930_050--Hb_109092_010 Hb_000204_040 Hb_000204_040 Hb_001930_050--Hb_000204_040 Hb_031089_010 Hb_031089_010 Hb_001930_050--Hb_031089_010 Hb_006921_030--Hb_039837_010 Hb_000166_110 Hb_000166_110 Hb_006921_030--Hb_000166_110 Hb_001677_060 Hb_001677_060 Hb_006921_030--Hb_001677_060 Hb_002054_040 Hb_002054_040 Hb_006921_030--Hb_002054_040 Hb_011689_020 Hb_011689_020 Hb_006921_030--Hb_011689_020 Hb_000699_140 Hb_000699_140 Hb_006921_030--Hb_000699_140 Hb_009382_020 Hb_009382_020 Hb_002119_060--Hb_009382_020 Hb_002119_060--Hb_031089_010 Hb_000836_360 Hb_000836_360 Hb_002119_060--Hb_000836_360 Hb_002026_100 Hb_002026_100 Hb_002119_060--Hb_002026_100 Hb_006400_040 Hb_006400_040 Hb_002119_060--Hb_006400_040 Hb_000392_070 Hb_000392_070 Hb_002119_060--Hb_000392_070 Hb_002811_360 Hb_002811_360 Hb_039837_010--Hb_002811_360 Hb_003058_130 Hb_003058_130 Hb_039837_010--Hb_003058_130 Hb_009111_050 Hb_009111_050 Hb_039837_010--Hb_009111_050 Hb_001454_210 Hb_001454_210 Hb_039837_010--Hb_001454_210 Hb_028872_140 Hb_028872_140 Hb_039837_010--Hb_028872_140 Hb_000321_070 Hb_000321_070 Hb_039837_010--Hb_000321_070 Hb_000109_160 Hb_000109_160 Hb_109092_010--Hb_000109_160 Hb_000245_130 Hb_000245_130 Hb_109092_010--Hb_000245_130 Hb_000127_130 Hb_000127_130 Hb_109092_010--Hb_000127_130 Hb_020956_020 Hb_020956_020 Hb_109092_010--Hb_020956_020 Hb_096563_010 Hb_096563_010 Hb_109092_010--Hb_096563_010 Hb_001252_010 Hb_001252_010 Hb_109092_010--Hb_001252_010 Hb_000120_500 Hb_000120_500 Hb_000204_040--Hb_000120_500 Hb_000943_070 Hb_000943_070 Hb_000204_040--Hb_000943_070 Hb_141131_010 Hb_141131_010 Hb_000204_040--Hb_141131_010 Hb_000749_150 Hb_000749_150 Hb_000204_040--Hb_000749_150 Hb_000364_010 Hb_000364_010 Hb_000204_040--Hb_000364_010 Hb_003502_080 Hb_003502_080 Hb_000204_040--Hb_003502_080 Hb_133271_020 Hb_133271_020 Hb_031089_010--Hb_133271_020 Hb_001030_120 Hb_001030_120 Hb_031089_010--Hb_001030_120 Hb_000017_120 Hb_000017_120 Hb_031089_010--Hb_000017_120 Hb_134226_010 Hb_134226_010 Hb_031089_010--Hb_134226_010 Hb_158092_070 Hb_158092_070 Hb_031089_010--Hb_158092_070 Hb_159558_030 Hb_159558_030 Hb_031089_010--Hb_159558_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.5656 20.9111 4.87481 36.3591 30.3956 61.527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.7351 45.726 38.0658 25.8139 6.59385

CAGE analysis