Hb_001930_060

Information

Type -
Description -
Location Contig1930: 54077-59792
Sequence    

Annotation

kegg
ID rcu:RCOM_0520560
description cytochrome P450, putative (EC:1.14.13.68)
nr
ID XP_004304108.2
description PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
swissprot
ID O48923
description Cytochrome P450 71D10 OS=Glycine max GN=CYP71D10 PE=2 SV=1
trembl
ID M1ARA4
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401010991 PE=4 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19285: 54225-55483 , PASA_asmbl_19286: 55571-55921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001930_060 0.0 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
2 Hb_166232_010 0.0381281829 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
3 Hb_002553_170 0.0399688843 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
4 Hb_002835_020 0.0514766276 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
5 Hb_003334_080 0.0560009173 - - Reticuline oxidase precursor, putative [Ricinus communis]
6 Hb_001301_020 0.056292443 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
7 Hb_009568_010 0.0572632706 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
8 Hb_000563_080 0.057820969 - - -
9 Hb_003188_020 0.0632682414 - - chitinase, putative [Ricinus communis]
10 Hb_109163_010 0.0672194981 - - polyphenol oxidase [Hevea brasiliensis]
11 Hb_000141_070 0.0672801605 - - l-lactate dehydrogenase, putative [Ricinus communis]
12 Hb_002758_020 0.0673462891 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
13 Hb_039363_010 0.0688165514 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
14 Hb_004693_010 0.0689347798 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
15 Hb_000446_100 0.0701743888 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
16 Hb_153208_010 0.0715080058 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
17 Hb_000563_060 0.0731849901 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
18 Hb_005464_040 0.0734200543 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000712_070 0.0734349944 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000388_160 0.074062173 - - xyloglucan endo-1 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001930_060 Hb_001930_060 Hb_166232_010 Hb_166232_010 Hb_001930_060--Hb_166232_010 Hb_002553_170 Hb_002553_170 Hb_001930_060--Hb_002553_170 Hb_002835_020 Hb_002835_020 Hb_001930_060--Hb_002835_020 Hb_003334_080 Hb_003334_080 Hb_001930_060--Hb_003334_080 Hb_001301_020 Hb_001301_020 Hb_001930_060--Hb_001301_020 Hb_009568_010 Hb_009568_010 Hb_001930_060--Hb_009568_010 Hb_000563_080 Hb_000563_080 Hb_166232_010--Hb_000563_080 Hb_166232_010--Hb_001301_020 Hb_002758_020 Hb_002758_020 Hb_166232_010--Hb_002758_020 Hb_003188_020 Hb_003188_020 Hb_166232_010--Hb_003188_020 Hb_002835_030 Hb_002835_030 Hb_166232_010--Hb_002835_030 Hb_002553_170--Hb_002835_020 Hb_002553_170--Hb_003334_080 Hb_000563_060 Hb_000563_060 Hb_002553_170--Hb_000563_060 Hb_002553_170--Hb_003188_020 Hb_000141_070 Hb_000141_070 Hb_002553_170--Hb_000141_070 Hb_039363_010 Hb_039363_010 Hb_002835_020--Hb_039363_010 Hb_002835_020--Hb_000563_060 Hb_000388_160 Hb_000388_160 Hb_002835_020--Hb_000388_160 Hb_002835_020--Hb_003334_080 Hb_003334_080--Hb_000141_070 Hb_058620_040 Hb_058620_040 Hb_003334_080--Hb_058620_040 Hb_003334_080--Hb_009568_010 Hb_058620_050 Hb_058620_050 Hb_003334_080--Hb_058620_050 Hb_001301_020--Hb_000563_080 Hb_001301_020--Hb_003188_020 Hb_000446_100 Hb_000446_100 Hb_001301_020--Hb_000446_100 Hb_004254_070 Hb_004254_070 Hb_001301_020--Hb_004254_070 Hb_005464_040 Hb_005464_040 Hb_001301_020--Hb_005464_040 Hb_014034_020 Hb_014034_020 Hb_001301_020--Hb_014034_020 Hb_009568_010--Hb_000141_070 Hb_007483_040 Hb_007483_040 Hb_009568_010--Hb_007483_040 Hb_009568_010--Hb_000446_100 Hb_001456_040 Hb_001456_040 Hb_009568_010--Hb_001456_040 Hb_020480_050 Hb_020480_050 Hb_009568_010--Hb_020480_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.619822 0.235626 0.948104 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0146367 0 0.0440598 37.8962 0.0245709

CAGE analysis