Hb_001930_070

Information

Type -
Description -
Location Contig1930: 68435-70337
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19287: 68699-70270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001930_070 0.0 - - -
2 Hb_006499_010 0.0536809697 - - -
3 Hb_001186_060 0.0900871088 - - -
4 Hb_007245_090 0.0917795903 - - -
5 Hb_000033_050 0.1047766263 - - -
6 Hb_000014_100 0.1078755679 - - -
7 Hb_002924_050 0.1082699924 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
8 Hb_000163_290 0.109612143 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
9 Hb_000371_110 0.1139940577 - - -
10 Hb_001514_190 0.1165350904 - - -
11 Hb_000567_200 0.1175056227 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
12 Hb_005214_110 0.1195279268 - - -
13 Hb_001158_030 0.1222925483 - - -
14 Hb_000809_040 0.1326127065 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
15 Hb_003747_240 0.13360119 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
16 Hb_000472_040 0.1344284876 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
17 Hb_011716_040 0.1368495965 - - -
18 Hb_031403_010 0.1386538299 - - hypothetical protein POPTR_0001s40140g [Populus trichocarpa]
19 Hb_004882_020 0.1390882879 - - -
20 Hb_006189_010 0.1391247491 - - -

Gene co-expression network

sample Hb_001930_070 Hb_001930_070 Hb_006499_010 Hb_006499_010 Hb_001930_070--Hb_006499_010 Hb_001186_060 Hb_001186_060 Hb_001930_070--Hb_001186_060 Hb_007245_090 Hb_007245_090 Hb_001930_070--Hb_007245_090 Hb_000033_050 Hb_000033_050 Hb_001930_070--Hb_000033_050 Hb_000014_100 Hb_000014_100 Hb_001930_070--Hb_000014_100 Hb_002924_050 Hb_002924_050 Hb_001930_070--Hb_002924_050 Hb_000163_290 Hb_000163_290 Hb_006499_010--Hb_000163_290 Hb_006499_010--Hb_007245_090 Hb_006499_010--Hb_000033_050 Hb_006499_010--Hb_001186_060 Hb_003747_240 Hb_003747_240 Hb_006499_010--Hb_003747_240 Hb_000371_110 Hb_000371_110 Hb_001186_060--Hb_000371_110 Hb_001186_060--Hb_000163_290 Hb_006189_010 Hb_006189_010 Hb_001186_060--Hb_006189_010 Hb_001186_060--Hb_000033_050 Hb_007245_090--Hb_000014_100 Hb_005214_110 Hb_005214_110 Hb_007245_090--Hb_005214_110 Hb_004882_020 Hb_004882_020 Hb_007245_090--Hb_004882_020 Hb_000339_070 Hb_000339_070 Hb_007245_090--Hb_000339_070 Hb_000033_050--Hb_000163_290 Hb_011716_040 Hb_011716_040 Hb_000033_050--Hb_011716_040 Hb_000033_050--Hb_000371_110 Hb_000014_100--Hb_006499_010 Hb_000014_100--Hb_003747_240 Hb_000014_100--Hb_011716_040 Hb_001158_030 Hb_001158_030 Hb_000014_100--Hb_001158_030 Hb_000567_200 Hb_000567_200 Hb_002924_050--Hb_000567_200 Hb_000472_040 Hb_000472_040 Hb_002924_050--Hb_000472_040 Hb_116701_020 Hb_116701_020 Hb_002924_050--Hb_116701_020 Hb_002924_050--Hb_006499_010 Hb_000784_130 Hb_000784_130 Hb_002924_050--Hb_000784_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.1806 15.8049 0.743796 0.0981581 52.1683 27.4748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.1894 35.0641 39.6585 12.5604 1.25353

CAGE analysis