Hb_001930_090

Information

Type -
Description -
Location Contig1930: 85285-85917
Sequence    

Annotation

kegg
ID rcu:RCOM_0067660
description DNA binding protein, putative
nr
ID XP_002530902.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9LTA2
description AT-hook motif nuclear-localized protein 17 OS=Arabidopsis thaliana GN=AHL17 PE=2 SV=1
trembl
ID B9SY33
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0067660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001930_090 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_104000_010 0.1357718312 - - -
3 Hb_144484_010 0.2478076336 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_003777_170 0.2600568768 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011909_110 0.2618784204 - - PREDICTED: uncharacterized protein LOC105633210 [Jatropha curcas]
6 Hb_024154_020 0.2725557315 - - polyphenol oxidase [Hevea brasiliensis]
7 Hb_173281_010 0.2766081859 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
8 Hb_000166_060 0.2903383396 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001959_130 0.2981654094 - - transporter, putative [Ricinus communis]
10 Hb_003144_050 0.2983759722 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
11 Hb_012022_130 0.3054881981 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
12 Hb_000920_370 0.3054902344 - - hypothetical protein JCGZ_24527 [Jatropha curcas]
13 Hb_001712_040 0.3094643971 - - Calmodulin, putative [Ricinus communis]
14 Hb_000676_340 0.3094810957 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_001635_020 0.3119113855 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
16 Hb_000042_220 0.3183836754 - - PREDICTED: uncharacterized protein LOC105632809 [Jatropha curcas]
17 Hb_000167_030 0.3232148697 - - PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
18 Hb_002043_120 0.3232552718 - - protein with unknown function [Ricinus communis]
19 Hb_001504_140 0.3249173664 - - PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
20 Hb_007120_040 0.3296375209 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001930_090 Hb_001930_090 Hb_104000_010 Hb_104000_010 Hb_001930_090--Hb_104000_010 Hb_144484_010 Hb_144484_010 Hb_001930_090--Hb_144484_010 Hb_003777_170 Hb_003777_170 Hb_001930_090--Hb_003777_170 Hb_011909_110 Hb_011909_110 Hb_001930_090--Hb_011909_110 Hb_024154_020 Hb_024154_020 Hb_001930_090--Hb_024154_020 Hb_173281_010 Hb_173281_010 Hb_001930_090--Hb_173281_010 Hb_104000_010--Hb_173281_010 Hb_104000_010--Hb_144484_010 Hb_003144_050 Hb_003144_050 Hb_104000_010--Hb_003144_050 Hb_104000_010--Hb_011909_110 Hb_002043_120 Hb_002043_120 Hb_104000_010--Hb_002043_120 Hb_012022_130 Hb_012022_130 Hb_144484_010--Hb_012022_130 Hb_001504_140 Hb_001504_140 Hb_144484_010--Hb_001504_140 Hb_001635_020 Hb_001635_020 Hb_144484_010--Hb_001635_020 Hb_001712_040 Hb_001712_040 Hb_144484_010--Hb_001712_040 Hb_000922_120 Hb_000922_120 Hb_144484_010--Hb_000922_120 Hb_000167_030 Hb_000167_030 Hb_144484_010--Hb_000167_030 Hb_000166_060 Hb_000166_060 Hb_003777_170--Hb_000166_060 Hb_007120_040 Hb_007120_040 Hb_003777_170--Hb_007120_040 Hb_011472_010 Hb_011472_010 Hb_003777_170--Hb_011472_010 Hb_002572_030 Hb_002572_030 Hb_003777_170--Hb_002572_030 Hb_007553_010 Hb_007553_010 Hb_003777_170--Hb_007553_010 Hb_001959_130 Hb_001959_130 Hb_011909_110--Hb_001959_130 Hb_015430_010 Hb_015430_010 Hb_011909_110--Hb_015430_010 Hb_011909_110--Hb_002043_120 Hb_011909_110--Hb_000167_030 Hb_000613_160 Hb_000613_160 Hb_011909_110--Hb_000613_160 Hb_008215_030 Hb_008215_030 Hb_011909_110--Hb_008215_030 Hb_002843_080 Hb_002843_080 Hb_024154_020--Hb_002843_080 Hb_000752_070 Hb_000752_070 Hb_024154_020--Hb_000752_070 Hb_024154_020--Hb_001712_040 Hb_024154_020--Hb_144484_010 Hb_024154_020--Hb_000922_120 Hb_024154_020--Hb_001504_140 Hb_003286_020 Hb_003286_020 Hb_173281_010--Hb_003286_020 Hb_003913_140 Hb_003913_140 Hb_173281_010--Hb_003913_140 Hb_000749_240 Hb_000749_240 Hb_173281_010--Hb_000749_240 Hb_001741_040 Hb_001741_040 Hb_173281_010--Hb_001741_040 Hb_173281_010--Hb_003144_050 Hb_001902_120 Hb_001902_120 Hb_173281_010--Hb_001902_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0305899 0.198232 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.373346 0.146724 0.258564 0 0

CAGE analysis