Hb_001934_010

Information

Type -
Description -
Location Contig1934: 3046-10496
Sequence    

Annotation

kegg
ID rcu:RCOM_1148460
description o-methyltransferase, putative (EC:2.1.1.104)
nr
ID XP_002527522.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID Q9C9W3
description Putative caffeoyl-CoA O-methyltransferase At1g67980 OS=Arabidopsis thaliana GN=At1g67980 PE=2 SV=1
trembl
ID B9SNF3
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_1148460 PE=4 SV=1
Gene Ontology
ID GO:0005829
description caffeoyl- o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001934_010 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_001610_050 0.1418149294 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
3 Hb_000181_450 0.1454847131 - - hypothetical protein JCGZ_20984 [Jatropha curcas]
4 Hb_160459_030 0.1456186482 - - PREDICTED: uncharacterized protein LOC105648122 [Jatropha curcas]
5 Hb_001277_420 0.1587843294 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
6 Hb_001016_040 0.1592818162 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
7 Hb_183209_020 0.1633163186 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
8 Hb_005892_010 0.16597059 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
9 Hb_002053_090 0.1691929173 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003371_210 0.1708182884 - - unnamed protein product [Vitis vinifera]
11 Hb_006550_010 0.1710658341 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
12 Hb_050898_010 0.175289502 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
13 Hb_000002_230 0.1768525447 - - RING/U-box superfamily protein [Theobroma cacao]
14 Hb_002984_030 0.1791004564 - - -
15 Hb_007313_050 0.1795668073 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
16 Hb_055993_010 0.1798115312 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
17 Hb_021443_020 0.1802951279 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
18 Hb_003216_020 0.1860238187 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
19 Hb_001013_060 0.1861417024 - - -
20 Hb_000221_070 0.1886175306 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001934_010 Hb_001934_010 Hb_001610_050 Hb_001610_050 Hb_001934_010--Hb_001610_050 Hb_000181_450 Hb_000181_450 Hb_001934_010--Hb_000181_450 Hb_160459_030 Hb_160459_030 Hb_001934_010--Hb_160459_030 Hb_001277_420 Hb_001277_420 Hb_001934_010--Hb_001277_420 Hb_001016_040 Hb_001016_040 Hb_001934_010--Hb_001016_040 Hb_183209_020 Hb_183209_020 Hb_001934_010--Hb_183209_020 Hb_000702_040 Hb_000702_040 Hb_001610_050--Hb_000702_040 Hb_021443_020 Hb_021443_020 Hb_001610_050--Hb_021443_020 Hb_005892_010 Hb_005892_010 Hb_001610_050--Hb_005892_010 Hb_002639_120 Hb_002639_120 Hb_001610_050--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_001610_050--Hb_006890_050 Hb_001227_010 Hb_001227_010 Hb_001610_050--Hb_001227_010 Hb_002461_080 Hb_002461_080 Hb_000181_450--Hb_002461_080 Hb_000181_450--Hb_160459_030 Hb_000221_070 Hb_000221_070 Hb_000181_450--Hb_000221_070 Hb_008554_010 Hb_008554_010 Hb_000181_450--Hb_008554_010 Hb_002984_030 Hb_002984_030 Hb_000181_450--Hb_002984_030 Hb_004195_030 Hb_004195_030 Hb_160459_030--Hb_004195_030 Hb_007313_050 Hb_007313_050 Hb_160459_030--Hb_007313_050 Hb_160459_030--Hb_021443_020 Hb_001059_050 Hb_001059_050 Hb_160459_030--Hb_001059_050 Hb_006550_010 Hb_006550_010 Hb_001277_420--Hb_006550_010 Hb_005695_020 Hb_005695_020 Hb_001277_420--Hb_005695_020 Hb_002894_040 Hb_002894_040 Hb_001277_420--Hb_002894_040 Hb_000002_230 Hb_000002_230 Hb_001277_420--Hb_000002_230 Hb_001277_420--Hb_183209_020 Hb_002053_090 Hb_002053_090 Hb_001277_420--Hb_002053_090 Hb_015884_010 Hb_015884_010 Hb_001016_040--Hb_015884_010 Hb_103149_010 Hb_103149_010 Hb_001016_040--Hb_103149_010 Hb_186495_010 Hb_186495_010 Hb_001016_040--Hb_186495_010 Hb_009476_160 Hb_009476_160 Hb_001016_040--Hb_009476_160 Hb_005396_030 Hb_005396_030 Hb_001016_040--Hb_005396_030 Hb_000732_100 Hb_000732_100 Hb_001016_040--Hb_000732_100 Hb_050898_010 Hb_050898_010 Hb_183209_020--Hb_050898_010 Hb_103541_010 Hb_103541_010 Hb_183209_020--Hb_103541_010 Hb_189034_010 Hb_189034_010 Hb_183209_020--Hb_189034_010 Hb_183209_020--Hb_000002_230 Hb_000137_030 Hb_000137_030 Hb_183209_020--Hb_000137_030 Hb_000203_150 Hb_000203_150 Hb_183209_020--Hb_000203_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 11.6177 1.30115 14.4755 0.139739 1.63991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0473171 0 0 4.2749 0.764281

CAGE analysis