Hb_001934_030

Information

Type transcription factor
Description TF Family: HSF
Location Contig1934: 22452-25862
Sequence    

Annotation

kegg
ID rcu:RCOM_1148470
description Heat shock factor protein, putative
nr
ID XP_002527523.1
description Heat shock factor protein, putative [Ricinus communis]
swissprot
ID Q9S7U5
description Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1
trembl
ID B9SNF4
description Heat shock factor protein, putative OS=Ricinus communis GN=RCOM_1148470 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat stress transcription factor a-8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19299: 22391-24914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001934_030 0.0 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
2 Hb_007154_020 0.0759771994 - - -
3 Hb_012627_050 0.0778108848 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
4 Hb_000853_430 0.0779541382 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
5 Hb_001005_060 0.0843356181 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
6 Hb_003069_010 0.0893493497 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
7 Hb_005186_050 0.0925313366 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
8 Hb_002232_440 0.0931584496 - - PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
9 Hb_003607_150 0.0949554313 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
10 Hb_047503_010 0.0951618886 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
11 Hb_008112_040 0.0959676767 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
12 Hb_001512_060 0.096873532 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
13 Hb_010661_030 0.0971498884 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
14 Hb_007477_070 0.0989685897 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
15 Hb_001404_100 0.099919551 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
16 Hb_001305_010 0.100576298 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
17 Hb_007576_040 0.1008477507 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
18 Hb_000771_120 0.1015619586 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
19 Hb_135545_010 0.1021870015 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_000362_200 0.1032131075 - - exonuclease family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001934_030 Hb_001934_030 Hb_007154_020 Hb_007154_020 Hb_001934_030--Hb_007154_020 Hb_012627_050 Hb_012627_050 Hb_001934_030--Hb_012627_050 Hb_000853_430 Hb_000853_430 Hb_001934_030--Hb_000853_430 Hb_001005_060 Hb_001005_060 Hb_001934_030--Hb_001005_060 Hb_003069_010 Hb_003069_010 Hb_001934_030--Hb_003069_010 Hb_005186_050 Hb_005186_050 Hb_001934_030--Hb_005186_050 Hb_011381_060 Hb_011381_060 Hb_007154_020--Hb_011381_060 Hb_010661_030 Hb_010661_030 Hb_007154_020--Hb_010661_030 Hb_001512_060 Hb_001512_060 Hb_007154_020--Hb_001512_060 Hb_007154_020--Hb_005186_050 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_010921_010 Hb_010921_010 Hb_007154_020--Hb_010921_010 Hb_012627_050--Hb_010661_030 Hb_012627_050--Hb_003069_010 Hb_007576_040 Hb_007576_040 Hb_012627_050--Hb_007576_040 Hb_009421_020 Hb_009421_020 Hb_012627_050--Hb_009421_020 Hb_000392_440 Hb_000392_440 Hb_012627_050--Hb_000392_440 Hb_001305_010 Hb_001305_010 Hb_000853_430--Hb_001305_010 Hb_004678_040 Hb_004678_040 Hb_000853_430--Hb_004678_040 Hb_004093_090 Hb_004093_090 Hb_000853_430--Hb_004093_090 Hb_000008_470 Hb_000008_470 Hb_000853_430--Hb_000008_470 Hb_012389_020 Hb_012389_020 Hb_000853_430--Hb_012389_020 Hb_000302_270 Hb_000302_270 Hb_000853_430--Hb_000302_270 Hb_001117_100 Hb_001117_100 Hb_001005_060--Hb_001117_100 Hb_004204_070 Hb_004204_070 Hb_001005_060--Hb_004204_070 Hb_001005_060--Hb_012627_050 Hb_002918_210 Hb_002918_210 Hb_001005_060--Hb_002918_210 Hb_001005_060--Hb_003069_010 Hb_003069_010--Hb_005186_050 Hb_003069_010--Hb_010661_030 Hb_003607_150 Hb_003607_150 Hb_003069_010--Hb_003607_150 Hb_003069_010--Hb_007154_020 Hb_004531_070 Hb_004531_070 Hb_003069_010--Hb_004531_070 Hb_005186_050--Hb_003607_150 Hb_000362_200 Hb_000362_200 Hb_005186_050--Hb_000362_200 Hb_005186_050--Hb_001512_060 Hb_000251_070 Hb_000251_070 Hb_005186_050--Hb_000251_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.6073 12.2247 25.9402 6.07129 26.9455 18.4847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.4873 33.8081 24.7501 10.183 5.89635

CAGE analysis