Hb_001935_040

Information

Type transcription factor
Description TF Family: SBP
Location Contig1935: 26272-27964
Sequence    

Annotation

kegg
ID rcu:RCOM_1609500
description LIGULELESS1 protein, putative
nr
ID XP_012083646.1
description PREDICTED: squamosa promoter-binding-like protein 8 [Jatropha curcas]
swissprot
ID Q8GXL3
description Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana GN=SPL8 PE=1 SV=2
trembl
ID A0A067JXX7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14587 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19306: 25505-28188 , PASA_asmbl_19307: 25505-28151
cDNA
(Sanger)
(ID:Location)		 026_N19.ab1: 25654-26664 , 031_E08.ab1: 25701-26818 , 033_E22.ab1: 25654-26652 , 040_L10.ab1: 25654-26679

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_040 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 8 [Jatropha curcas]
2 Hb_114292_010 0.1102376854 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000115_190 0.1447008652 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
4 Hb_000142_030 0.1511603007 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
5 Hb_000347_160 0.1532489673 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
6 Hb_000157_060 0.1551771292 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
7 Hb_003599_060 0.1551871137 - - calmodulin binding protein, putative [Ricinus communis]
8 Hb_028187_010 0.1689864114 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
9 Hb_000164_030 0.1703498726 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
10 Hb_000739_250 0.172324951 - - PREDICTED: uncharacterized protein LOC105120821 [Populus euphratica]
11 Hb_064971_010 0.1753546139 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
12 Hb_001040_050 0.1760660394 - - Stem-specific protein TSJT1, putative [Ricinus communis]
13 Hb_006142_020 0.1768073811 - - JHL25P11.12 [Jatropha curcas]
14 Hb_005649_070 0.177754592 - - conserved hypothetical protein [Ricinus communis]
15 Hb_048141_060 0.1793169929 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
16 Hb_004800_030 0.1802169439 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
17 Hb_108744_010 0.1816695173 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
18 Hb_000367_240 0.1819793296 - - hypothetical protein JCGZ_11682 [Jatropha curcas]
19 Hb_000028_250 0.1845624879 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
20 Hb_002486_090 0.1854772966 - - hypothetical protein POPTR_0005s06910g [Populus trichocarpa]

Gene co-expression network

sample Hb_001935_040 Hb_001935_040 Hb_114292_010 Hb_114292_010 Hb_001935_040--Hb_114292_010 Hb_000115_190 Hb_000115_190 Hb_001935_040--Hb_000115_190 Hb_000142_030 Hb_000142_030 Hb_001935_040--Hb_000142_030 Hb_000347_160 Hb_000347_160 Hb_001935_040--Hb_000347_160 Hb_000157_060 Hb_000157_060 Hb_001935_040--Hb_000157_060 Hb_003599_060 Hb_003599_060 Hb_001935_040--Hb_003599_060 Hb_114292_010--Hb_000142_030 Hb_002218_050 Hb_002218_050 Hb_114292_010--Hb_002218_050 Hb_114292_010--Hb_000115_190 Hb_114292_010--Hb_000347_160 Hb_000367_240 Hb_000367_240 Hb_114292_010--Hb_000367_240 Hb_001040_050 Hb_001040_050 Hb_000115_190--Hb_001040_050 Hb_000028_250 Hb_000028_250 Hb_000115_190--Hb_000028_250 Hb_006519_020 Hb_006519_020 Hb_000115_190--Hb_006519_020 Hb_002447_060 Hb_002447_060 Hb_000115_190--Hb_002447_060 Hb_000388_040 Hb_000388_040 Hb_000115_190--Hb_000388_040 Hb_005162_120 Hb_005162_120 Hb_000115_190--Hb_005162_120 Hb_000142_030--Hb_003599_060 Hb_007441_290 Hb_007441_290 Hb_000142_030--Hb_007441_290 Hb_012753_150 Hb_012753_150 Hb_000142_030--Hb_012753_150 Hb_001277_120 Hb_001277_120 Hb_000142_030--Hb_001277_120 Hb_001143_200 Hb_001143_200 Hb_000142_030--Hb_001143_200 Hb_000347_160--Hb_001040_050 Hb_005649_050 Hb_005649_050 Hb_000347_160--Hb_005649_050 Hb_087793_010 Hb_087793_010 Hb_000347_160--Hb_087793_010 Hb_002078_310 Hb_002078_310 Hb_000347_160--Hb_002078_310 Hb_006788_130 Hb_006788_130 Hb_000347_160--Hb_006788_130 Hb_028187_010 Hb_028187_010 Hb_000157_060--Hb_028187_010 Hb_064971_010 Hb_064971_010 Hb_000157_060--Hb_064971_010 Hb_000157_060--Hb_002447_060 Hb_074660_010 Hb_074660_010 Hb_000157_060--Hb_074660_010 Hb_000164_030 Hb_000164_030 Hb_000157_060--Hb_000164_030 Hb_006142_020 Hb_006142_020 Hb_000157_060--Hb_006142_020 Hb_031266_030 Hb_031266_030 Hb_003599_060--Hb_031266_030 Hb_003599_060--Hb_012753_150 Hb_014497_070 Hb_014497_070 Hb_003599_060--Hb_014497_070 Hb_006060_010 Hb_006060_010 Hb_003599_060--Hb_006060_010 Hb_003878_060 Hb_003878_060 Hb_003599_060--Hb_003878_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.53955 3.52206 35.4169 8.01065 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.281032 1.19346 0.323574 0.0712548 0.179724

CAGE analysis