Hb_001935_050

Information

Type transcription factor
Description TF Family: SBP
Location Contig1935: 36771-46653
Sequence    

Annotation

kegg
ID pop:POPTR_0002s14330g
description POPTRDRAFT_755123; hypothetical protein
nr
ID XP_012083645.1
description PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
swissprot
ID Q7XT42
description Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. japonica GN=SPL7 PE=2 SV=2
trembl
ID A0A067K966
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14586 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_050 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
2 Hb_000864_040 0.0189095507 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000189_610 0.0233917547 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]
4 Hb_001543_010 0.024597987 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010904_020 0.0307200336 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
6 Hb_124540_010 0.0330702934 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
7 Hb_014870_010 0.0358705485 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
8 Hb_000084_270 0.0584552874 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
9 Hb_000186_020 0.065625197 - - PREDICTED: uncharacterized protein LOC104901327 [Beta vulgaris subsp. vulgaris]
10 Hb_099335_020 0.0664317361 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
11 Hb_000032_120 0.0680940201 - - Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
12 Hb_001068_060 0.0683626828 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
13 Hb_000877_010 0.0709962595 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
14 Hb_002571_110 0.0943839676 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
15 Hb_007676_090 0.095720971 - - PREDICTED: uncharacterized protein LOC105644038 [Jatropha curcas]
16 Hb_003598_060 0.0981438665 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
17 Hb_003428_020 0.1000964293 - - PREDICTED: uncharacterized protein LOC105140247 [Populus euphratica]
18 Hb_000037_210 0.10269346 - - -
19 Hb_009083_060 0.1035406317 - - PREDICTED: uncharacterized protein LOC103344557 [Prunus mume]
20 Hb_002056_040 0.1080012689 - - arsenical pump-driving atpase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001935_050 Hb_001935_050 Hb_000864_040 Hb_000864_040 Hb_001935_050--Hb_000864_040 Hb_000189_610 Hb_000189_610 Hb_001935_050--Hb_000189_610 Hb_001543_010 Hb_001543_010 Hb_001935_050--Hb_001543_010 Hb_010904_020 Hb_010904_020 Hb_001935_050--Hb_010904_020 Hb_124540_010 Hb_124540_010 Hb_001935_050--Hb_124540_010 Hb_014870_010 Hb_014870_010 Hb_001935_050--Hb_014870_010 Hb_000864_040--Hb_000189_610 Hb_000864_040--Hb_001543_010 Hb_000864_040--Hb_010904_020 Hb_000864_040--Hb_124540_010 Hb_099335_020 Hb_099335_020 Hb_000864_040--Hb_099335_020 Hb_000189_610--Hb_001543_010 Hb_000189_610--Hb_010904_020 Hb_000189_610--Hb_124540_010 Hb_000189_610--Hb_099335_020 Hb_001543_010--Hb_010904_020 Hb_001543_010--Hb_124540_010 Hb_001543_010--Hb_099335_020 Hb_010904_020--Hb_124540_010 Hb_010904_020--Hb_099335_020 Hb_124540_010--Hb_099335_020 Hb_000084_270 Hb_000084_270 Hb_014870_010--Hb_000084_270 Hb_000186_020 Hb_000186_020 Hb_014870_010--Hb_000186_020 Hb_014870_010--Hb_000864_040 Hb_014870_010--Hb_000189_610 Hb_007676_090 Hb_007676_090 Hb_014870_010--Hb_007676_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0688744 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0489045

CAGE analysis