Hb_001935_060

Information

Type -
Description -
Location Contig1935: 58800-59873
Sequence    

Annotation

kegg
ID rcu:RCOM_1609630
description Metalloendoproteinase 1 precursor, putative (EC:3.4.24.7)
nr
ID XP_012083853.1
description PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID A0A067KAH7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14585 PE=4 SV=1
Gene Ontology
ID GO:0031012
description metalloendoproteinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_060 0.0 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
2 Hb_001377_220 0.0296516711 - - dopamine beta-monooxygenase, putative [Ricinus communis]
3 Hb_010166_010 0.0401407679 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
4 Hb_002311_010 0.046810049 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
5 Hb_002078_180 0.0472895266 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
6 Hb_005686_040 0.049396674 - - conserved hypothetical protein [Ricinus communis]
7 Hb_038927_020 0.049466598 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
8 Hb_000416_020 0.0564080948 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000086_490 0.0572520628 - - cellulose synthase [Populus tomentosa]
10 Hb_000776_090 0.0590465379 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
11 Hb_050514_030 0.0595994389 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
12 Hb_001051_060 0.0608340407 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
13 Hb_002662_070 0.0638014656 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
14 Hb_002739_140 0.0655031605 - - PREDICTED: protein TPX2 [Jatropha curcas]
15 Hb_005523_030 0.0661133512 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
16 Hb_002835_360 0.0697713409 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
17 Hb_000193_320 0.0728488995 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000347_060 0.0730861247 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
19 Hb_000173_240 0.0765821168 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000328_030 0.0766487439 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]

Gene co-expression network

sample Hb_001935_060 Hb_001935_060 Hb_001377_220 Hb_001377_220 Hb_001935_060--Hb_001377_220 Hb_010166_010 Hb_010166_010 Hb_001935_060--Hb_010166_010 Hb_002311_010 Hb_002311_010 Hb_001935_060--Hb_002311_010 Hb_002078_180 Hb_002078_180 Hb_001935_060--Hb_002078_180 Hb_005686_040 Hb_005686_040 Hb_001935_060--Hb_005686_040 Hb_038927_020 Hb_038927_020 Hb_001935_060--Hb_038927_020 Hb_001377_220--Hb_010166_010 Hb_001377_220--Hb_002311_010 Hb_002662_070 Hb_002662_070 Hb_001377_220--Hb_002662_070 Hb_001377_220--Hb_005686_040 Hb_001377_220--Hb_002078_180 Hb_050514_030 Hb_050514_030 Hb_010166_010--Hb_050514_030 Hb_010166_010--Hb_002311_010 Hb_000416_020 Hb_000416_020 Hb_010166_010--Hb_000416_020 Hb_010166_010--Hb_005686_040 Hb_002311_010--Hb_038927_020 Hb_007281_010 Hb_007281_010 Hb_002311_010--Hb_007281_010 Hb_002311_010--Hb_000416_020 Hb_002078_180--Hb_005686_040 Hb_002835_360 Hb_002835_360 Hb_002078_180--Hb_002835_360 Hb_015807_090 Hb_015807_090 Hb_002078_180--Hb_015807_090 Hb_000086_490 Hb_000086_490 Hb_002078_180--Hb_000086_490 Hb_009476_080 Hb_009476_080 Hb_002078_180--Hb_009476_080 Hb_001051_060 Hb_001051_060 Hb_005686_040--Hb_001051_060 Hb_005686_040--Hb_000086_490 Hb_005686_040--Hb_002835_360 Hb_005523_030 Hb_005523_030 Hb_005686_040--Hb_005523_030 Hb_005686_040--Hb_015807_090 Hb_038927_020--Hb_000416_020 Hb_038927_020--Hb_007281_010 Hb_038927_020--Hb_001377_220 Hb_002739_140 Hb_002739_140 Hb_038927_020--Hb_002739_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0202827 0.771275 1.69313 22.0438 0.0203421 0.0219162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0732623 16.7308

CAGE analysis