Hb_001935_090

Information

Type -
Description -
Location Contig1935: 69660-70763
Sequence    

Annotation

kegg
ID rcu:RCOM_1609640
description hypothetical protein
nr
ID XP_012083643.1
description PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1B1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14584 PE=4 SV=1
Gene Ontology
ID GO:0019031
description late cornified envelope protein 1e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19309: 69685-70708
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_090 0.0 - - PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]
2 Hb_001595_040 0.1374833945 - - Root phototropism protein, putative [Ricinus communis]
3 Hb_000849_050 0.2015607256 - - hypothetical protein VITISV_010852 [Vitis vinifera]
4 Hb_000242_030 0.2061675815 - - PREDICTED: uncharacterized protein LOC102608003 [Citrus sinensis]
5 Hb_003102_030 0.2103521297 - - PREDICTED: uncharacterized protein LOC105644418 [Jatropha curcas]
6 Hb_000050_140 0.2114492786 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Populus euphratica]
7 Hb_025964_040 0.2118273873 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
8 Hb_003029_060 0.2209600985 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
9 Hb_011671_280 0.2231589502 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF106-like [Populus euphratica]
10 Hb_000422_130 0.2245006474 - - hypothetical protein JCGZ_15217 [Jatropha curcas]
11 Hb_001357_280 0.2310454231 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
12 Hb_004631_170 0.2322694478 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000914_050 0.233290862 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
14 Hb_083493_010 0.2335570895 - - Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_004052_160 0.2348929835 - - Chain A, Rna Binding Protein
16 Hb_154538_010 0.2369711032 - - -
17 Hb_000011_070 0.2400951022 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
18 Hb_001369_800 0.2450417002 - - hypothetical protein B456_011G005000 [Gossypium raimondii]
19 Hb_187021_010 0.2455097971 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_000631_090 0.2463940639 - - PREDICTED: uncharacterized protein LOC105640619 [Jatropha curcas]

Gene co-expression network

sample Hb_001935_090 Hb_001935_090 Hb_001595_040 Hb_001595_040 Hb_001935_090--Hb_001595_040 Hb_000849_050 Hb_000849_050 Hb_001935_090--Hb_000849_050 Hb_000242_030 Hb_000242_030 Hb_001935_090--Hb_000242_030 Hb_003102_030 Hb_003102_030 Hb_001935_090--Hb_003102_030 Hb_000050_140 Hb_000050_140 Hb_001935_090--Hb_000050_140 Hb_025964_040 Hb_025964_040 Hb_001935_090--Hb_025964_040 Hb_003029_060 Hb_003029_060 Hb_001595_040--Hb_003029_060 Hb_001595_040--Hb_003102_030 Hb_000011_070 Hb_000011_070 Hb_001595_040--Hb_000011_070 Hb_000422_130 Hb_000422_130 Hb_001595_040--Hb_000422_130 Hb_000963_050 Hb_000963_050 Hb_001595_040--Hb_000963_050 Hb_000849_050--Hb_025964_040 Hb_000849_050--Hb_000242_030 Hb_004052_160 Hb_004052_160 Hb_000849_050--Hb_004052_160 Hb_006120_080 Hb_006120_080 Hb_000849_050--Hb_006120_080 Hb_182249_010 Hb_182249_010 Hb_000849_050--Hb_182249_010 Hb_004837_050 Hb_004837_050 Hb_000242_030--Hb_004837_050 Hb_000045_160 Hb_000045_160 Hb_000242_030--Hb_000045_160 Hb_000242_030--Hb_025964_040 Hb_000470_110 Hb_000470_110 Hb_000242_030--Hb_000470_110 Hb_000523_030 Hb_000523_030 Hb_000242_030--Hb_000523_030 Hb_000631_090 Hb_000631_090 Hb_000242_030--Hb_000631_090 Hb_007044_160 Hb_007044_160 Hb_003102_030--Hb_007044_160 Hb_005941_030 Hb_005941_030 Hb_003102_030--Hb_005941_030 Hb_000914_050 Hb_000914_050 Hb_003102_030--Hb_000914_050 Hb_000071_160 Hb_000071_160 Hb_003102_030--Hb_000071_160 Hb_003102_030--Hb_000011_070 Hb_002374_550 Hb_002374_550 Hb_003102_030--Hb_002374_550 Hb_000050_140--Hb_001595_040 Hb_002659_130 Hb_002659_130 Hb_000050_140--Hb_002659_130 Hb_001050_060 Hb_001050_060 Hb_000050_140--Hb_001050_060 Hb_000505_070 Hb_000505_070 Hb_000050_140--Hb_000505_070 Hb_000050_140--Hb_003102_030 Hb_007777_010 Hb_007777_010 Hb_025964_040--Hb_007777_010 Hb_001114_020 Hb_001114_020 Hb_025964_040--Hb_001114_020 Hb_087587_010 Hb_087587_010 Hb_025964_040--Hb_087587_010 Hb_025964_040--Hb_000045_160 Hb_025964_040--Hb_000631_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.44393 14.8279 22.0647 27.6585 0.421816 17.4249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.232987 0.366338 0 3.02693 8.11955

CAGE analysis