Hb_001935_100

Information

Type -
Description -
Location Contig1935: 79526-82987
Sequence    

Annotation

kegg
ID rcu:RCOM_1609650
description structural molecule, putative
nr
ID XP_002511641.1
description structural molecule, putative [Ricinus communis]
swissprot
ID O81304
description Probable plastid-lipid-associated protein 11 OS=Arabidopsis thaliana GN=PAP11 PE=2 SV=1
trembl
ID B9RD52
description Structural molecule, putative OS=Ricinus communis GN=RCOM_1609650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19311: 79562-82966 , PASA_asmbl_19313: 81618-81819 , PASA_asmbl_19314: 79562-82826
cDNA
(Sanger)
(ID:Location)		 010_N18.ab1: 80179-80597 , 012_G08.ab1: 80032-82963

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_100 0.0 - - structural molecule, putative [Ricinus communis]
2 Hb_000051_060 0.067841861 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000227_170 0.0733544741 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_005539_010 0.0746839081 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
5 Hb_001410_070 0.0767013137 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
6 Hb_000796_160 0.0789987576 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
7 Hb_005946_040 0.0804254427 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
8 Hb_000025_780 0.0810218802 - - PREDICTED: sanguinarine reductase [Jatropha curcas]
9 Hb_005162_110 0.0823410834 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
10 Hb_003752_070 0.0827581141 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
11 Hb_019053_060 0.0844904975 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
12 Hb_005494_010 0.0870294832 - - catalytic, putative [Ricinus communis]
13 Hb_006538_120 0.0878488602 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
14 Hb_001195_460 0.0887982541 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
15 Hb_000487_260 0.0896685498 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
16 Hb_001587_180 0.0910128578 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
17 Hb_000003_780 0.0924596578 - - hexokinase [Manihot esculenta]
18 Hb_009775_010 0.0930529976 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
19 Hb_002876_220 0.0936506957 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
20 Hb_001541_050 0.0936977258 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001935_100 Hb_001935_100 Hb_000051_060 Hb_000051_060 Hb_001935_100--Hb_000051_060 Hb_000227_170 Hb_000227_170 Hb_001935_100--Hb_000227_170 Hb_005539_010 Hb_005539_010 Hb_001935_100--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_001935_100--Hb_001410_070 Hb_000796_160 Hb_000796_160 Hb_001935_100--Hb_000796_160 Hb_005946_040 Hb_005946_040 Hb_001935_100--Hb_005946_040 Hb_005162_110 Hb_005162_110 Hb_000051_060--Hb_005162_110 Hb_003752_070 Hb_003752_070 Hb_000051_060--Hb_003752_070 Hb_021650_010 Hb_021650_010 Hb_000051_060--Hb_021650_010 Hb_002876_220 Hb_002876_220 Hb_000051_060--Hb_002876_220 Hb_001232_150 Hb_001232_150 Hb_000051_060--Hb_001232_150 Hb_107879_010 Hb_107879_010 Hb_000227_170--Hb_107879_010 Hb_000025_780 Hb_000025_780 Hb_000227_170--Hb_000025_780 Hb_005494_010 Hb_005494_010 Hb_000227_170--Hb_005494_010 Hb_003029_070 Hb_003029_070 Hb_000227_170--Hb_003029_070 Hb_000304_070 Hb_000304_070 Hb_000227_170--Hb_000304_070 Hb_006538_120 Hb_006538_120 Hb_005539_010--Hb_006538_120 Hb_000212_440 Hb_000212_440 Hb_005539_010--Hb_000212_440 Hb_000941_100 Hb_000941_100 Hb_005539_010--Hb_000941_100 Hb_005539_010--Hb_000227_170 Hb_012150_030 Hb_012150_030 Hb_005539_010--Hb_012150_030 Hb_001410_070--Hb_006538_120 Hb_001410_070--Hb_000796_160 Hb_001410_070--Hb_000025_780 Hb_009775_010 Hb_009775_010 Hb_001410_070--Hb_009775_010 Hb_001410_070--Hb_005539_010 Hb_000796_160--Hb_000025_780 Hb_000487_260 Hb_000487_260 Hb_000796_160--Hb_000487_260 Hb_076778_010 Hb_076778_010 Hb_000796_160--Hb_076778_010 Hb_000230_400 Hb_000230_400 Hb_000796_160--Hb_000230_400 Hb_000537_100 Hb_000537_100 Hb_005946_040--Hb_000537_100 Hb_005946_040--Hb_005162_110 Hb_002876_300 Hb_002876_300 Hb_005946_040--Hb_002876_300 Hb_029622_120 Hb_029622_120 Hb_005946_040--Hb_029622_120 Hb_002631_240 Hb_002631_240 Hb_005946_040--Hb_002631_240 Hb_007558_090 Hb_007558_090 Hb_005946_040--Hb_007558_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8229 13.6466 39.0557 15.3257 16.1752 14.7305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2395 23.0352 11.9957 8.71124 36.9861

CAGE analysis