Hb_001935_150

Information

Type -
Description -
Location Contig1935: 125026-125274
Sequence    

Annotation

kegg
ID tcc:TCM_005610
description Preprotein translocase Sec, Sec61-beta subunit protein
nr
ID XP_012083635.1
description PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
swissprot
ID P38389
description Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=1 SV=1
trembl
ID A0A067JY56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14578 PE=4 SV=1
Gene Ontology
ID GO:0005784
description protein transport protein sec61 subunit beta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19321: 124786-126458 , PASA_asmbl_19323: 124882-126391
cDNA
(Sanger)
(ID:Location)		 007_L12.ab1: 124882-126391 , 012_F17.ab1: 124882-126391 , 033_C18.ab1: 124921-126457

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_150 0.0 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
2 Hb_014834_030 0.0892411007 - - -
3 Hb_007894_230 0.1073307912 - - 30S ribosomal protein S14, putative [Ricinus communis]
4 Hb_000025_240 0.114995327 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
5 Hb_001638_240 0.1198280143 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
6 Hb_009372_030 0.122876246 - - 50S ribosomal protein L6, putative [Ricinus communis]
7 Hb_002631_260 0.125779814 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
8 Hb_002843_210 0.1262717582 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
9 Hb_076175_010 0.1284809592 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]
10 Hb_172706_030 0.1335986336 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
11 Hb_075359_010 0.1347358526 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
12 Hb_004659_060 0.1351267006 - - RAS-related GTP-binding family protein [Populus trichocarpa]
13 Hb_006541_020 0.1355905458 - - unknown [Lotus japonicus]
14 Hb_042710_010 0.1385948504 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
15 Hb_008748_020 0.1444217302 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
16 Hb_000181_380 0.1444591993 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
17 Hb_001571_110 0.1458988549 - - PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]
18 Hb_000367_210 0.1467805198 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
19 Hb_130235_010 0.1485164116 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
20 Hb_000672_120 0.1493701675 - - V-type proton ATPase subunit G 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001935_150 Hb_001935_150 Hb_014834_030 Hb_014834_030 Hb_001935_150--Hb_014834_030 Hb_007894_230 Hb_007894_230 Hb_001935_150--Hb_007894_230 Hb_000025_240 Hb_000025_240 Hb_001935_150--Hb_000025_240 Hb_001638_240 Hb_001638_240 Hb_001935_150--Hb_001638_240 Hb_009372_030 Hb_009372_030 Hb_001935_150--Hb_009372_030 Hb_002631_260 Hb_002631_260 Hb_001935_150--Hb_002631_260 Hb_000367_210 Hb_000367_210 Hb_014834_030--Hb_000367_210 Hb_002843_210 Hb_002843_210 Hb_014834_030--Hb_002843_210 Hb_187083_010 Hb_187083_010 Hb_014834_030--Hb_187083_010 Hb_003561_030 Hb_003561_030 Hb_014834_030--Hb_003561_030 Hb_001158_150 Hb_001158_150 Hb_014834_030--Hb_001158_150 Hb_002078_260 Hb_002078_260 Hb_007894_230--Hb_002078_260 Hb_080601_020 Hb_080601_020 Hb_007894_230--Hb_080601_020 Hb_001571_110 Hb_001571_110 Hb_007894_230--Hb_001571_110 Hb_001220_010 Hb_001220_010 Hb_007894_230--Hb_001220_010 Hb_005694_020 Hb_005694_020 Hb_007894_230--Hb_005694_020 Hb_006541_020 Hb_006541_020 Hb_000025_240--Hb_006541_020 Hb_008748_020 Hb_008748_020 Hb_000025_240--Hb_008748_020 Hb_005914_200 Hb_005914_200 Hb_000025_240--Hb_005914_200 Hb_006718_010 Hb_006718_010 Hb_000025_240--Hb_006718_010 Hb_000025_240--Hb_014834_030 Hb_002025_300 Hb_002025_300 Hb_000025_240--Hb_002025_300 Hb_003663_070 Hb_003663_070 Hb_001638_240--Hb_003663_070 Hb_004659_060 Hb_004659_060 Hb_001638_240--Hb_004659_060 Hb_001638_240--Hb_002843_210 Hb_005588_070 Hb_005588_070 Hb_001638_240--Hb_005588_070 Hb_000672_120 Hb_000672_120 Hb_001638_240--Hb_000672_120 Hb_076175_010 Hb_076175_010 Hb_009372_030--Hb_076175_010 Hb_009372_030--Hb_002025_300 Hb_010449_040 Hb_010449_040 Hb_009372_030--Hb_010449_040 Hb_009372_030--Hb_001638_240 Hb_009372_030--Hb_004659_060 Hb_000049_050 Hb_000049_050 Hb_002631_260--Hb_000049_050 Hb_138585_040 Hb_138585_040 Hb_002631_260--Hb_138585_040 Hb_002324_010 Hb_002324_010 Hb_002631_260--Hb_002324_010 Hb_000260_790 Hb_000260_790 Hb_002631_260--Hb_000260_790 Hb_001410_060 Hb_001410_060 Hb_002631_260--Hb_001410_060 Hb_003880_040 Hb_003880_040 Hb_002631_260--Hb_003880_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
106.077 40.6359 96.1878 1008.81 92.1044 781.651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
957.04 1730.47 771.423 362.683 203.656

CAGE analysis