Hb_001935_190

Information

Type -
Description -
Location Contig1935: 183721-184676
Sequence    

Annotation

kegg
ID rcu:RCOM_1609920
description Nuc-1 negative regulatory protein preg, putative
nr
ID XP_002511648.1
description Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
swissprot
ID Q9SHD3
description Cyclin-U2-1 OS=Arabidopsis thaliana GN=CYCU2-1 PE=1 SV=1
trembl
ID B9RD59
description Nuc-1 negative regulatory protein preg, putative OS=Ricinus communis GN=RCOM_1609920 PE=4 SV=1
Gene Ontology
ID GO:0019901
description nuc-1 negative regulatory protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_190 0.0 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
2 Hb_120662_010 0.1454599296 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
3 Hb_001916_120 0.1899190306 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
4 Hb_001916_060 0.1913531384 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
5 Hb_000329_420 0.1947795763 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
6 Hb_000792_110 0.1949409437 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
7 Hb_000252_090 0.1959608986 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
8 Hb_001907_060 0.1966284808 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
9 Hb_001677_050 0.1966439279 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
10 Hb_000617_040 0.1978838639 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
11 Hb_003222_010 0.1986481449 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_002326_060 0.1989478848 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
13 Hb_101020_010 0.1990302458 - - -
14 Hb_000018_160 0.2003919189 - - nitrate transporter, putative [Ricinus communis]
15 Hb_000544_120 0.2011891695 - - PREDICTED: thymidylate kinase [Jatropha curcas]
16 Hb_077211_010 0.2017112203 - - PREDICTED: lariat debranching enzyme-like [Jatropha curcas]
17 Hb_005568_070 0.202056789 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
18 Hb_001138_010 0.2021283485 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_035360_010 0.2038189905 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
20 Hb_000619_070 0.2049958981 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]

Gene co-expression network

sample Hb_001935_190 Hb_001935_190 Hb_120662_010 Hb_120662_010 Hb_001935_190--Hb_120662_010 Hb_001916_120 Hb_001916_120 Hb_001935_190--Hb_001916_120 Hb_001916_060 Hb_001916_060 Hb_001935_190--Hb_001916_060 Hb_000329_420 Hb_000329_420 Hb_001935_190--Hb_000329_420 Hb_000792_110 Hb_000792_110 Hb_001935_190--Hb_000792_110 Hb_000252_090 Hb_000252_090 Hb_001935_190--Hb_000252_090 Hb_003043_060 Hb_003043_060 Hb_120662_010--Hb_003043_060 Hb_030627_040 Hb_030627_040 Hb_120662_010--Hb_030627_040 Hb_050686_010 Hb_050686_010 Hb_120662_010--Hb_050686_010 Hb_120662_010--Hb_000329_420 Hb_001901_080 Hb_001901_080 Hb_120662_010--Hb_001901_080 Hb_001138_010 Hb_001138_010 Hb_001916_120--Hb_001138_010 Hb_001916_120--Hb_000252_090 Hb_001277_410 Hb_001277_410 Hb_001916_120--Hb_001277_410 Hb_000365_260 Hb_000365_260 Hb_001916_120--Hb_000365_260 Hb_004324_240 Hb_004324_240 Hb_001916_120--Hb_004324_240 Hb_018954_020 Hb_018954_020 Hb_001916_120--Hb_018954_020 Hb_101020_010 Hb_101020_010 Hb_001916_060--Hb_101020_010 Hb_114984_010 Hb_114984_010 Hb_001916_060--Hb_114984_010 Hb_001195_150 Hb_001195_150 Hb_001916_060--Hb_001195_150 Hb_128376_010 Hb_128376_010 Hb_001916_060--Hb_128376_010 Hb_005517_010 Hb_005517_010 Hb_001916_060--Hb_005517_010 Hb_000215_260 Hb_000215_260 Hb_000329_420--Hb_000215_260 Hb_000329_420--Hb_001916_120 Hb_000056_120 Hb_000056_120 Hb_000329_420--Hb_000056_120 Hb_000329_420--Hb_000252_090 Hb_000056_230 Hb_000056_230 Hb_000329_420--Hb_000056_230 Hb_002265_030 Hb_002265_030 Hb_000329_420--Hb_002265_030 Hb_000211_090 Hb_000211_090 Hb_000792_110--Hb_000211_090 Hb_000779_040 Hb_000779_040 Hb_000792_110--Hb_000779_040 Hb_000890_220 Hb_000890_220 Hb_000792_110--Hb_000890_220 Hb_035360_010 Hb_035360_010 Hb_000792_110--Hb_035360_010 Hb_010189_010 Hb_010189_010 Hb_000792_110--Hb_010189_010 Hb_012760_200 Hb_012760_200 Hb_000792_110--Hb_012760_200 Hb_000252_090--Hb_001138_010 Hb_000329_540 Hb_000329_540 Hb_000252_090--Hb_000329_540 Hb_000156_030 Hb_000156_030 Hb_000252_090--Hb_000156_030 Hb_000441_230 Hb_000441_230 Hb_000252_090--Hb_000441_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
111.396 40.1697 8.52389 31.942 106.061 119.851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.99698 2.40605 6.04518 2.37049 1.84832

CAGE analysis