Hb_001936_020

Information

Type -
Description -
Location Contig1936: 13609-28476
Sequence    

Annotation

kegg
ID rcu:RCOM_0528000
description phosphatidylinositol 3-kinase class, putative (EC:2.7.1.137)
nr
ID XP_012085400.1
description PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
swissprot
ID P42347
description Phosphatidylinositol 3-kinase, root isoform OS=Glycine max PE=2 SV=1
trembl
ID A0A067JUT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17761 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phosphatidylinositol 3- root isoform

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19327: 13678-28521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_020 0.0 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
2 Hb_003994_240 0.0607548541 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
3 Hb_004577_020 0.0651890877 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
4 Hb_000483_360 0.0658552212 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
5 Hb_004108_140 0.0725494197 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
6 Hb_011671_430 0.0729182732 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
7 Hb_000059_210 0.0741707267 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010931_120 0.0765670967 - - myosin heavy chain-related family protein [Populus trichocarpa]
9 Hb_003728_030 0.0800894688 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
10 Hb_004355_020 0.0803385155 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
11 Hb_002030_030 0.0817764644 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
12 Hb_000260_220 0.0818300125 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
13 Hb_001663_030 0.0822693031 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
14 Hb_005993_020 0.0843887672 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
15 Hb_002603_120 0.0851902013 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
16 Hb_005539_030 0.086225309 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
17 Hb_010931_080 0.0884375557 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
18 Hb_000487_290 0.0884814164 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
19 Hb_006586_050 0.08892392 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
20 Hb_001252_010 0.0891925375 - - hypothetical protein JCGZ_01389 [Jatropha curcas]

Gene co-expression network

sample Hb_001936_020 Hb_001936_020 Hb_003994_240 Hb_003994_240 Hb_001936_020--Hb_003994_240 Hb_004577_020 Hb_004577_020 Hb_001936_020--Hb_004577_020 Hb_000483_360 Hb_000483_360 Hb_001936_020--Hb_000483_360 Hb_004108_140 Hb_004108_140 Hb_001936_020--Hb_004108_140 Hb_011671_430 Hb_011671_430 Hb_001936_020--Hb_011671_430 Hb_000059_210 Hb_000059_210 Hb_001936_020--Hb_000059_210 Hb_004934_090 Hb_004934_090 Hb_003994_240--Hb_004934_090 Hb_003728_030 Hb_003728_030 Hb_003994_240--Hb_003728_030 Hb_001663_030 Hb_001663_030 Hb_003994_240--Hb_001663_030 Hb_003994_240--Hb_004108_140 Hb_002030_030 Hb_002030_030 Hb_003994_240--Hb_002030_030 Hb_004577_020--Hb_011671_430 Hb_010417_080 Hb_010417_080 Hb_004577_020--Hb_010417_080 Hb_000853_350 Hb_000853_350 Hb_004577_020--Hb_000853_350 Hb_000853_170 Hb_000853_170 Hb_004577_020--Hb_000853_170 Hb_003952_070 Hb_003952_070 Hb_004577_020--Hb_003952_070 Hb_000483_360--Hb_003728_030 Hb_005539_030 Hb_005539_030 Hb_000483_360--Hb_005539_030 Hb_000556_020 Hb_000556_020 Hb_000483_360--Hb_000556_020 Hb_005215_030 Hb_005215_030 Hb_000483_360--Hb_005215_030 Hb_000300_280 Hb_000300_280 Hb_000483_360--Hb_000300_280 Hb_026099_010 Hb_026099_010 Hb_004108_140--Hb_026099_010 Hb_185679_010 Hb_185679_010 Hb_004108_140--Hb_185679_010 Hb_003935_030 Hb_003935_030 Hb_004108_140--Hb_003935_030 Hb_004370_030 Hb_004370_030 Hb_004108_140--Hb_004370_030 Hb_000038_170 Hb_000038_170 Hb_011671_430--Hb_000038_170 Hb_014497_050 Hb_014497_050 Hb_011671_430--Hb_014497_050 Hb_003058_190 Hb_003058_190 Hb_011671_430--Hb_003058_190 Hb_004355_020 Hb_004355_020 Hb_011671_430--Hb_004355_020 Hb_003158_010 Hb_003158_010 Hb_011671_430--Hb_003158_010 Hb_006586_050 Hb_006586_050 Hb_000059_210--Hb_006586_050 Hb_156850_030 Hb_156850_030 Hb_000059_210--Hb_156850_030 Hb_000291_190 Hb_000291_190 Hb_000059_210--Hb_000291_190 Hb_033152_080 Hb_033152_080 Hb_000059_210--Hb_033152_080 Hb_004734_060 Hb_004734_060 Hb_000059_210--Hb_004734_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.6521 46.2963 17.404 20.0456 49.1657 61.8181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.1806 33.6486 36.7896 38.4182 16.5232

CAGE analysis