Hb_001936_030

Information

Type -
Description -
Location Contig1936: 32101-36995
Sequence    

Annotation

kegg
ID rcu:RCOM_0527980
description polygalacturonase, putative (EC:3.2.1.67)
nr
ID XP_012085405.1
description PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
swissprot
ID I1BYM7
description Exopolygalacturonase rpg15 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=rpg15 PE=1 SV=1
trembl
ID A0A067K2X7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17763 PE=3 SV=1
Gene Ontology
ID GO:0005576
description polygalacturonase at1g48100 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19332: 32493-33724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_030 0.0 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
2 Hb_000917_330 0.0736940875 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
3 Hb_000625_130 0.0893002081 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
4 Hb_002248_020 0.1065131773 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]
5 Hb_025469_040 0.1091978114 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
6 Hb_007044_070 0.1200493885 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas]
7 Hb_004774_060 0.1208787325 - - -
8 Hb_001691_060 0.1246094545 - - lipoxygenase, putative [Ricinus communis]
9 Hb_003166_020 0.1277852036 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
10 Hb_131864_020 0.1288664696 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
11 Hb_004055_180 0.132610946 - - cell wall invertase [Manihot esculenta]
12 Hb_000075_030 0.1355805709 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]
13 Hb_029571_010 0.1375768719 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
14 Hb_001279_220 0.1401131673 - - protein binding protein, putative [Ricinus communis]
15 Hb_000631_130 0.1406996426 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
16 Hb_142522_030 0.1410635592 - - hypothetical protein JCGZ_21596 [Jatropha curcas]
17 Hb_000748_070 0.1411415186 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
18 Hb_003392_030 0.1423041553 - - conserved hypothetical protein [Ricinus communis]
19 Hb_026650_010 0.142444448 - - nitrate transporter, putative [Ricinus communis]
20 Hb_148435_010 0.1429546159 - - glutathione s-transferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001936_030 Hb_001936_030 Hb_000917_330 Hb_000917_330 Hb_001936_030--Hb_000917_330 Hb_000625_130 Hb_000625_130 Hb_001936_030--Hb_000625_130 Hb_002248_020 Hb_002248_020 Hb_001936_030--Hb_002248_020 Hb_025469_040 Hb_025469_040 Hb_001936_030--Hb_025469_040 Hb_007044_070 Hb_007044_070 Hb_001936_030--Hb_007044_070 Hb_004774_060 Hb_004774_060 Hb_001936_030--Hb_004774_060 Hb_000917_330--Hb_000625_130 Hb_003166_020 Hb_003166_020 Hb_000917_330--Hb_003166_020 Hb_001691_060 Hb_001691_060 Hb_000917_330--Hb_001691_060 Hb_000075_030 Hb_000075_030 Hb_000917_330--Hb_000075_030 Hb_000917_330--Hb_025469_040 Hb_142522_030 Hb_142522_030 Hb_000625_130--Hb_142522_030 Hb_001377_480 Hb_001377_480 Hb_000625_130--Hb_001377_480 Hb_000625_130--Hb_025469_040 Hb_000625_130--Hb_003166_020 Hb_029571_010 Hb_029571_010 Hb_002248_020--Hb_029571_010 Hb_002248_020--Hb_004774_060 Hb_001279_220 Hb_001279_220 Hb_002248_020--Hb_001279_220 Hb_004055_180 Hb_004055_180 Hb_002248_020--Hb_004055_180 Hb_002218_040 Hb_002218_040 Hb_002248_020--Hb_002218_040 Hb_131864_020 Hb_131864_020 Hb_025469_040--Hb_131864_020 Hb_001473_100 Hb_001473_100 Hb_025469_040--Hb_001473_100 Hb_000631_130 Hb_000631_130 Hb_025469_040--Hb_000631_130 Hb_025469_040--Hb_007044_070 Hb_148914_010 Hb_148914_010 Hb_025469_040--Hb_148914_010 Hb_007044_070--Hb_000631_130 Hb_007044_070--Hb_131864_020 Hb_007044_070--Hb_001473_100 Hb_007044_070--Hb_142522_030 Hb_175968_010 Hb_175968_010 Hb_004774_060--Hb_175968_010 Hb_004774_060--Hb_001279_220 Hb_004774_060--Hb_004055_180 Hb_033363_080 Hb_033363_080 Hb_004774_060--Hb_033363_080 Hb_097908_010 Hb_097908_010 Hb_004774_060--Hb_097908_010 Hb_000659_010 Hb_000659_010 Hb_004774_060--Hb_000659_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.020436 0.589079 5.97437 2.55085 0.0262217 0.0174047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0207288 0.0163105 0.123965 32.7661 0.967251

CAGE analysis