Hb_001936_050

Information

Type -
Description -
Location Contig1936: 53431-59130
Sequence    

Annotation

kegg
ID pmum:103321783
description pentatricopeptide repeat-containing protein At4g08210-like
nr
ID XP_008221839.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
swissprot
ID P35336
description Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1
trembl
ID A0A0D2PUY8
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G181300 PE=4 SV=1
Gene Ontology
ID GO:0005576
description pentatricopeptide repeat-containing protein at5g27110-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
2 Hb_000490_030 0.0549904277 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
3 Hb_002874_070 0.0754355824 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
4 Hb_000358_080 0.0777806743 - - Ribonuclease 3 [Gossypium arboreum]
5 Hb_002818_040 0.078376494 - - tRNA synthetase-related family protein [Populus trichocarpa]
6 Hb_011496_010 0.0790286846 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
7 Hb_000340_510 0.0795996549 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
8 Hb_004324_280 0.0819319729 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
9 Hb_185467_020 0.0832361321 - - Cucumisin precursor, putative [Ricinus communis]
10 Hb_003297_030 0.0885912975 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
11 Hb_000462_150 0.0891895798 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
12 Hb_029281_010 0.0899938582 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
13 Hb_002631_050 0.0928414958 - - membrane associated ring finger 1,8, putative [Ricinus communis]
14 Hb_000481_010 0.0929494602 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
15 Hb_009404_010 0.0929720582 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
16 Hb_001538_010 0.0936310228 - - -
17 Hb_006091_030 0.0937533092 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
18 Hb_008453_150 0.0939721485 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
19 Hb_000608_120 0.0950254251 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
20 Hb_001141_330 0.0954842308 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]

Gene co-expression network

sample Hb_001936_050 Hb_001936_050 Hb_000490_030 Hb_000490_030 Hb_001936_050--Hb_000490_030 Hb_002874_070 Hb_002874_070 Hb_001936_050--Hb_002874_070 Hb_000358_080 Hb_000358_080 Hb_001936_050--Hb_000358_080 Hb_002818_040 Hb_002818_040 Hb_001936_050--Hb_002818_040 Hb_011496_010 Hb_011496_010 Hb_001936_050--Hb_011496_010 Hb_000340_510 Hb_000340_510 Hb_001936_050--Hb_000340_510 Hb_029281_010 Hb_029281_010 Hb_000490_030--Hb_029281_010 Hb_000490_030--Hb_000358_080 Hb_006091_030 Hb_006091_030 Hb_000490_030--Hb_006091_030 Hb_000490_030--Hb_000340_510 Hb_000490_030--Hb_002874_070 Hb_001584_110 Hb_001584_110 Hb_002874_070--Hb_001584_110 Hb_004440_100 Hb_004440_100 Hb_002874_070--Hb_004440_100 Hb_185467_020 Hb_185467_020 Hb_002874_070--Hb_185467_020 Hb_002928_060 Hb_002928_060 Hb_002874_070--Hb_002928_060 Hb_022256_040 Hb_022256_040 Hb_002874_070--Hb_022256_040 Hb_007943_080 Hb_007943_080 Hb_000358_080--Hb_007943_080 Hb_000138_040 Hb_000138_040 Hb_000358_080--Hb_000138_040 Hb_000358_080--Hb_006091_030 Hb_010710_010 Hb_010710_010 Hb_000358_080--Hb_010710_010 Hb_002818_040--Hb_000340_510 Hb_000462_150 Hb_000462_150 Hb_002818_040--Hb_000462_150 Hb_003384_030 Hb_003384_030 Hb_002818_040--Hb_003384_030 Hb_000001_180 Hb_000001_180 Hb_002818_040--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_002818_040--Hb_005314_010 Hb_005914_230 Hb_005914_230 Hb_002818_040--Hb_005914_230 Hb_002169_010 Hb_002169_010 Hb_011496_010--Hb_002169_010 Hb_011496_010--Hb_029281_010 Hb_011496_010--Hb_000462_150 Hb_011496_010--Hb_002818_040 Hb_003638_140 Hb_003638_140 Hb_011496_010--Hb_003638_140 Hb_000481_010 Hb_000481_010 Hb_000340_510--Hb_000481_010 Hb_000340_510--Hb_000001_180 Hb_000107_100 Hb_000107_100 Hb_000340_510--Hb_000107_100 Hb_002026_110 Hb_002026_110 Hb_000340_510--Hb_002026_110 Hb_017168_010 Hb_017168_010 Hb_000340_510--Hb_017168_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.24685 1.3974 0.567057 0.532712 3.45637 4.32066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.73327 1.79672 3.48263 0.812577 0.483159

CAGE analysis