Hb_001936_060

Information

Type -
Description -
Location Contig1936: 61440-63516
Sequence    

Annotation

kegg
ID rcu:RCOM_0527850
description pyroglutamyl-peptidase I, putative (EC:3.4.19.3)
nr
ID XP_002525358.1
description pyroglutamyl-peptidase I, putative [Ricinus communis]
swissprot
ID O73944
description Pyrrolidone-carboxylate peptidase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pcp PE=1 SV=1
trembl
ID B9SH89
description Pyroglutamyl-peptidase I, putative OS=Ricinus communis GN=RCOM_0527850 PE=4 SV=1
Gene Ontology
ID GO:0005829
description pyroglutamyl-peptidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19334: 61455-62610 , PASA_asmbl_19335: 63471-63575
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_060 0.0 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
2 Hb_001390_110 0.0543067002 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
3 Hb_000390_180 0.0678241409 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
4 Hb_001289_080 0.0731387843 - - PREDICTED: protein YLS9-like [Jatropha curcas]
5 Hb_156973_010 0.0739855292 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000853_230 0.074724317 - - syntaxin, putative [Ricinus communis]
7 Hb_002890_020 0.0777121701 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
8 Hb_000029_130 0.0778086145 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
9 Hb_003125_160 0.0779192478 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
10 Hb_000345_170 0.0782410744 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
11 Hb_000207_310 0.0783905819 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
12 Hb_000365_120 0.0785569706 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
13 Hb_001369_180 0.07867015 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
14 Hb_009467_060 0.0793511154 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
15 Hb_007218_080 0.0798893662 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
16 Hb_007894_140 0.0801786444 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
17 Hb_000498_010 0.082140534 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_023480_010 0.084382709 - - cellular nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000020_190 0.084582548 - - hypothetical protein RCOM_0452240 [Ricinus communis]
20 Hb_000794_050 0.0849742477 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_001936_060 Hb_001936_060 Hb_001390_110 Hb_001390_110 Hb_001936_060--Hb_001390_110 Hb_000390_180 Hb_000390_180 Hb_001936_060--Hb_000390_180 Hb_001289_080 Hb_001289_080 Hb_001936_060--Hb_001289_080 Hb_156973_010 Hb_156973_010 Hb_001936_060--Hb_156973_010 Hb_000853_230 Hb_000853_230 Hb_001936_060--Hb_000853_230 Hb_002890_020 Hb_002890_020 Hb_001936_060--Hb_002890_020 Hb_008406_110 Hb_008406_110 Hb_001390_110--Hb_008406_110 Hb_001390_110--Hb_000390_180 Hb_001390_110--Hb_000853_230 Hb_000926_190 Hb_000926_190 Hb_001390_110--Hb_000926_190 Hb_000794_050 Hb_000794_050 Hb_001390_110--Hb_000794_050 Hb_000498_010 Hb_000498_010 Hb_000390_180--Hb_000498_010 Hb_000390_180--Hb_000853_230 Hb_016461_010 Hb_016461_010 Hb_000390_180--Hb_016461_010 Hb_006620_020 Hb_006620_020 Hb_000390_180--Hb_006620_020 Hb_000638_120 Hb_000638_120 Hb_001289_080--Hb_000638_120 Hb_004410_030 Hb_004410_030 Hb_001289_080--Hb_004410_030 Hb_004689_050 Hb_004689_050 Hb_001289_080--Hb_004689_050 Hb_003025_110 Hb_003025_110 Hb_001289_080--Hb_003025_110 Hb_000029_130 Hb_000029_130 Hb_001289_080--Hb_000029_130 Hb_023386_020 Hb_023386_020 Hb_156973_010--Hb_023386_020 Hb_002175_030 Hb_002175_030 Hb_156973_010--Hb_002175_030 Hb_003125_160 Hb_003125_160 Hb_156973_010--Hb_003125_160 Hb_001258_090 Hb_001258_090 Hb_156973_010--Hb_001258_090 Hb_156973_010--Hb_000853_230 Hb_000403_050 Hb_000403_050 Hb_156973_010--Hb_000403_050 Hb_000853_230--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_000853_230--Hb_004055_150 Hb_000879_200 Hb_000879_200 Hb_000853_230--Hb_000879_200 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_001926_030 Hb_001926_030 Hb_000853_230--Hb_001926_030 Hb_000207_310 Hb_000207_310 Hb_002890_020--Hb_000207_310 Hb_000345_170 Hb_000345_170 Hb_002890_020--Hb_000345_170 Hb_002205_040 Hb_002205_040 Hb_002890_020--Hb_002205_040 Hb_002890_020--Hb_000029_130 Hb_016898_010 Hb_016898_010 Hb_002890_020--Hb_016898_010 Hb_003952_150 Hb_003952_150 Hb_002890_020--Hb_003952_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8259 3.63147 3.8737 3.30924 7.98865 7.66131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.77323 5.49642 4.78997 5.55457 4.76393

CAGE analysis