Hb_001936_070

Information

Type -
Description -
Location Contig1936: 68285-73653
Sequence    

Annotation

kegg
ID rcu:RCOM_0528970
description hypothetical protein
nr
ID XP_012085414.1
description PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Jatropha curcas]
swissprot
ID Q9M548
description DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1
trembl
ID A0A067K2Y4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17768 PE=4 SV=1
Gene Ontology
ID GO:0016740
description dna (cytosine-5)-methyltransferase drm2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_070 0.0 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Jatropha curcas]
2 Hb_000111_480 0.1793296811 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
3 Hb_089032_010 0.1924518111 - - PREDICTED: flotillin-like protein 3 [Jatropha curcas]
4 Hb_004235_060 0.2337190201 - - phosphate transporter [Manihot esculenta]
5 Hb_011716_050 0.2399973344 - - serine acetyltransferase [Hevea brasiliensis]
6 Hb_001113_030 0.2431923685 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
7 Hb_000042_250 0.2462052187 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
8 Hb_000252_080 0.2500519425 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
9 Hb_006120_170 0.2501851621 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108-like [Populus euphratica]
10 Hb_005288_020 0.2511360647 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
11 Hb_065500_040 0.2553341126 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002686_120 0.2606043445 - - short-chain type dehydrogenase, putative [Ricinus communis]
13 Hb_005276_170 0.268950084 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
14 Hb_124315_030 0.2706710136 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
15 Hb_000975_330 0.2706804758 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
16 Hb_000009_310 0.2735392363 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_007676_020 0.2743871774 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
18 Hb_003120_040 0.2744995284 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
19 Hb_000111_300 0.2786658771 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
20 Hb_000914_130 0.2793212991 - - copper-transporting atpase p-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_001936_070 Hb_001936_070 Hb_000111_480 Hb_000111_480 Hb_001936_070--Hb_000111_480 Hb_089032_010 Hb_089032_010 Hb_001936_070--Hb_089032_010 Hb_004235_060 Hb_004235_060 Hb_001936_070--Hb_004235_060 Hb_011716_050 Hb_011716_050 Hb_001936_070--Hb_011716_050 Hb_001113_030 Hb_001113_030 Hb_001936_070--Hb_001113_030 Hb_000042_250 Hb_000042_250 Hb_001936_070--Hb_000042_250 Hb_000111_480--Hb_001113_030 Hb_000111_480--Hb_000042_250 Hb_002686_120 Hb_002686_120 Hb_000111_480--Hb_002686_120 Hb_007676_020 Hb_007676_020 Hb_000111_480--Hb_007676_020 Hb_000111_480--Hb_011716_050 Hb_089032_010--Hb_001113_030 Hb_089032_010--Hb_000111_480 Hb_000671_170 Hb_000671_170 Hb_089032_010--Hb_000671_170 Hb_089032_010--Hb_011716_050 Hb_006846_020 Hb_006846_020 Hb_089032_010--Hb_006846_020 Hb_006120_170 Hb_006120_170 Hb_004235_060--Hb_006120_170 Hb_000252_080 Hb_000252_080 Hb_004235_060--Hb_000252_080 Hb_000347_020 Hb_000347_020 Hb_004235_060--Hb_000347_020 Hb_009083_010 Hb_009083_010 Hb_004235_060--Hb_009083_010 Hb_006615_160 Hb_006615_160 Hb_004235_060--Hb_006615_160 Hb_031108_010 Hb_031108_010 Hb_004235_060--Hb_031108_010 Hb_000107_440 Hb_000107_440 Hb_011716_050--Hb_000107_440 Hb_029622_020 Hb_029622_020 Hb_011716_050--Hb_029622_020 Hb_011716_050--Hb_006846_020 Hb_000038_040 Hb_000038_040 Hb_011716_050--Hb_000038_040 Hb_006935_010 Hb_006935_010 Hb_011716_050--Hb_006935_010 Hb_001959_120 Hb_001959_120 Hb_011716_050--Hb_001959_120 Hb_124315_030 Hb_124315_030 Hb_001113_030--Hb_124315_030 Hb_000672_150 Hb_000672_150 Hb_001113_030--Hb_000672_150 Hb_008173_030 Hb_008173_030 Hb_001113_030--Hb_008173_030 Hb_001113_030--Hb_001959_120 Hb_006573_300 Hb_006573_300 Hb_000042_250--Hb_006573_300 Hb_000042_250--Hb_001113_030 Hb_000042_250--Hb_007676_020 Hb_001114_070 Hb_001114_070 Hb_000042_250--Hb_001114_070 Hb_000042_250--Hb_124315_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.187787 0.079895 0.0155053 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0236988 0.0372932 0.0353168 0.111324 0

CAGE analysis