Hb_001936_080

Information

Type -
Description -
Location Contig1936: 74082-77131
Sequence    

Annotation

kegg
ID pop:POPTR_0009s16880g
description POPTRDRAFT_803974; hypothetical protein
nr
ID XP_012066990.1
description PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
swissprot
ID A4FVJ7
description RNA-binding protein 48 OS=Danio rerio GN=rbm48 PE=2 SV=1
trembl
ID B9HPX6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s16880g PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 48-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19336: 74121-77223 , PASA_asmbl_19337: 74131-75093
cDNA
(Sanger)
(ID:Location)		 026_N10.ab1: 74121-76754

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_080 0.0 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
2 Hb_003001_120 0.0595144759 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
3 Hb_028227_020 0.0656864919 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
4 Hb_002495_040 0.0674111276 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
5 Hb_009557_070 0.0688956423 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000465_430 0.0712219679 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
7 Hb_012092_010 0.0719736491 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
8 Hb_011689_080 0.0731070417 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
9 Hb_003683_050 0.0738308005 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
10 Hb_000092_100 0.073840561 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
11 Hb_003030_070 0.0744193916 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
12 Hb_000457_110 0.0748743667 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
13 Hb_001157_020 0.0775646192 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
14 Hb_001195_760 0.0776811495 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
15 Hb_010407_040 0.0784507126 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
16 Hb_000163_160 0.0793497473 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
17 Hb_009694_010 0.0795013217 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000054_100 0.0798569922 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
19 Hb_000661_250 0.0802137219 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
20 Hb_004310_130 0.0802743813 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]

Gene co-expression network

sample Hb_001936_080 Hb_001936_080 Hb_003001_120 Hb_003001_120 Hb_001936_080--Hb_003001_120 Hb_028227_020 Hb_028227_020 Hb_001936_080--Hb_028227_020 Hb_002495_040 Hb_002495_040 Hb_001936_080--Hb_002495_040 Hb_009557_070 Hb_009557_070 Hb_001936_080--Hb_009557_070 Hb_000465_430 Hb_000465_430 Hb_001936_080--Hb_000465_430 Hb_012092_010 Hb_012092_010 Hb_001936_080--Hb_012092_010 Hb_003929_160 Hb_003929_160 Hb_003001_120--Hb_003929_160 Hb_011689_080 Hb_011689_080 Hb_003001_120--Hb_011689_080 Hb_001269_680 Hb_001269_680 Hb_003001_120--Hb_001269_680 Hb_118707_030 Hb_118707_030 Hb_003001_120--Hb_118707_030 Hb_000230_200 Hb_000230_200 Hb_003001_120--Hb_000230_200 Hb_001157_020 Hb_001157_020 Hb_028227_020--Hb_001157_020 Hb_009694_010 Hb_009694_010 Hb_028227_020--Hb_009694_010 Hb_005697_060 Hb_005697_060 Hb_028227_020--Hb_005697_060 Hb_012725_050 Hb_012725_050 Hb_028227_020--Hb_012725_050 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_002495_040--Hb_000465_430 Hb_003030_070 Hb_003030_070 Hb_002495_040--Hb_003030_070 Hb_001369_180 Hb_001369_180 Hb_002495_040--Hb_001369_180 Hb_002495_040--Hb_012092_010 Hb_000092_100 Hb_000092_100 Hb_002495_040--Hb_000092_100 Hb_000329_030 Hb_000329_030 Hb_009557_070--Hb_000329_030 Hb_000045_090 Hb_000045_090 Hb_009557_070--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_009557_070--Hb_143398_010 Hb_007416_280 Hb_007416_280 Hb_009557_070--Hb_007416_280 Hb_003175_010 Hb_003175_010 Hb_009557_070--Hb_003175_010 Hb_003929_250 Hb_003929_250 Hb_009557_070--Hb_003929_250 Hb_000465_430--Hb_012092_010 Hb_003502_080 Hb_003502_080 Hb_000465_430--Hb_003502_080 Hb_033843_010 Hb_033843_010 Hb_000465_430--Hb_033843_010 Hb_005016_170 Hb_005016_170 Hb_000465_430--Hb_005016_170 Hb_000465_430--Hb_000092_100 Hb_002391_300 Hb_002391_300 Hb_012092_010--Hb_002391_300 Hb_012092_010--Hb_003030_070 Hb_001195_760 Hb_001195_760 Hb_012092_010--Hb_001195_760
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.97085 3.50691 6.65867 5.22323 8.17433 11.2005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7969 11.1329 6.01006 3.50847 3.45174

CAGE analysis