Hb_001936_120

Information

Type -
Description -
Location Contig1936: 110328-115798
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05250g
description POPTRDRAFT_230624; hypothetical protein
nr
ID XP_012085425.1
description PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JRU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17775 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19346: 111546-114873 , PASA_asmbl_19347: 112466-114873
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_120 0.0 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
2 Hb_029791_010 0.0840661764 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
3 Hb_036520_030 0.0938338764 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
4 Hb_005305_040 0.0941378008 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
5 Hb_000358_060 0.0970090629 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
6 Hb_011381_050 0.0993526609 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
7 Hb_002388_070 0.0995986836 - - ring finger protein, putative [Ricinus communis]
8 Hb_004032_290 0.1005131038 - - protein binding protein, putative [Ricinus communis]
9 Hb_133492_010 0.1020432823 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000457_120 0.1027946196 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
11 Hb_000000_260 0.1073433103 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
12 Hb_000161_140 0.108047356 - - PREDICTED: WEB family protein At3g51220 [Jatropha curcas]
13 Hb_002186_110 0.1081138842 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
14 Hb_000093_010 0.1089126236 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
15 Hb_000137_050 0.1089344218 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000849_030 0.1089544627 - - PREDICTED: fimbrin-2 [Jatropha curcas]
17 Hb_000230_410 0.1093465215 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
18 Hb_001688_030 0.1098497715 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
19 Hb_004917_020 0.1110657708 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
20 Hb_000395_310 0.111366694 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001936_120 Hb_001936_120 Hb_029791_010 Hb_029791_010 Hb_001936_120--Hb_029791_010 Hb_036520_030 Hb_036520_030 Hb_001936_120--Hb_036520_030 Hb_005305_040 Hb_005305_040 Hb_001936_120--Hb_005305_040 Hb_000358_060 Hb_000358_060 Hb_001936_120--Hb_000358_060 Hb_011381_050 Hb_011381_050 Hb_001936_120--Hb_011381_050 Hb_002388_070 Hb_002388_070 Hb_001936_120--Hb_002388_070 Hb_000000_260 Hb_000000_260 Hb_029791_010--Hb_000000_260 Hb_180980_010 Hb_180980_010 Hb_029791_010--Hb_180980_010 Hb_000317_170 Hb_000317_170 Hb_029791_010--Hb_000317_170 Hb_133492_010 Hb_133492_010 Hb_029791_010--Hb_133492_010 Hb_000599_160 Hb_000599_160 Hb_029791_010--Hb_000599_160 Hb_004032_290 Hb_004032_290 Hb_036520_030--Hb_004032_290 Hb_001408_080 Hb_001408_080 Hb_036520_030--Hb_001408_080 Hb_001427_100 Hb_001427_100 Hb_036520_030--Hb_001427_100 Hb_002874_200 Hb_002874_200 Hb_036520_030--Hb_002874_200 Hb_003466_010 Hb_003466_010 Hb_036520_030--Hb_003466_010 Hb_010164_030 Hb_010164_030 Hb_036520_030--Hb_010164_030 Hb_000161_140 Hb_000161_140 Hb_005305_040--Hb_000161_140 Hb_000928_200 Hb_000928_200 Hb_005305_040--Hb_000928_200 Hb_002759_030 Hb_002759_030 Hb_005305_040--Hb_002759_030 Hb_000457_120 Hb_000457_120 Hb_005305_040--Hb_000457_120 Hb_163950_050 Hb_163950_050 Hb_005305_040--Hb_163950_050 Hb_002997_150 Hb_002997_150 Hb_000358_060--Hb_002997_150 Hb_001225_050 Hb_001225_050 Hb_000358_060--Hb_001225_050 Hb_000230_410 Hb_000230_410 Hb_000358_060--Hb_000230_410 Hb_000077_250 Hb_000077_250 Hb_000358_060--Hb_000077_250 Hb_000358_060--Hb_002388_070 Hb_115572_010 Hb_115572_010 Hb_011381_050--Hb_115572_010 Hb_002186_110 Hb_002186_110 Hb_011381_050--Hb_002186_110 Hb_009117_020 Hb_009117_020 Hb_011381_050--Hb_009117_020 Hb_001401_120 Hb_001401_120 Hb_011381_050--Hb_001401_120 Hb_011381_050--Hb_036520_030 Hb_000197_260 Hb_000197_260 Hb_011381_050--Hb_000197_260 Hb_000395_310 Hb_000395_310 Hb_002388_070--Hb_000395_310 Hb_002388_070--Hb_002874_200 Hb_002388_070--Hb_002997_150 Hb_002388_070--Hb_004032_290 Hb_004020_030 Hb_004020_030 Hb_002388_070--Hb_004020_030 Hb_002388_070--Hb_000230_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.01135 2.2452 10.8214 0.0921107 0.0104092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0270373 0.106361 0 0.423874 4.33794

CAGE analysis