Hb_001936_130

Information

Type -
Description -
Location Contig1936: 116718-125572
Sequence    

Annotation

kegg
ID rcu:RCOM_0529240
description Signal recognition particle receptor subunit beta, putative
nr
ID XP_012085428.1
description PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
swissprot
ID Q54XX1
description Signal recognition particle receptor subunit beta OS=Dictyostelium discoideum GN=srprb PE=3 SV=1
trembl
ID A0A067JUV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17776 PE=4 SV=1
Gene Ontology
ID GO:0005622
description signal recognition particle receptor subunit beta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19349: 116757-119715
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_130 0.0 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
2 Hb_001004_070 0.0611631631 - - conserved hypothetical protein [Ricinus communis]
3 Hb_027380_220 0.0685877359 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
4 Hb_091296_010 0.0722227859 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
5 Hb_003025_100 0.0724974341 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
6 Hb_012498_010 0.0737124162 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
7 Hb_000260_010 0.0738670581 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
8 Hb_011228_010 0.0749224957 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000069_210 0.0772496465 - - PREDICTED: exportin-2 [Jatropha curcas]
10 Hb_000062_540 0.0774351296 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000212_380 0.0781111969 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
12 Hb_005291_050 0.0794251798 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
13 Hb_043792_040 0.0830090825 - - hypothetical protein, partial [Rosa rugosa]
14 Hb_001629_030 0.0848349002 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
15 Hb_004109_080 0.0853280185 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
16 Hb_000352_120 0.0857050016 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
17 Hb_002026_150 0.0863414658 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
18 Hb_006275_070 0.0864358254 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
19 Hb_001818_100 0.0865222958 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
20 Hb_001876_010 0.0882849674 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001936_130 Hb_001936_130 Hb_001004_070 Hb_001004_070 Hb_001936_130--Hb_001004_070 Hb_027380_220 Hb_027380_220 Hb_001936_130--Hb_027380_220 Hb_091296_010 Hb_091296_010 Hb_001936_130--Hb_091296_010 Hb_003025_100 Hb_003025_100 Hb_001936_130--Hb_003025_100 Hb_012498_010 Hb_012498_010 Hb_001936_130--Hb_012498_010 Hb_000260_010 Hb_000260_010 Hb_001936_130--Hb_000260_010 Hb_005291_050 Hb_005291_050 Hb_001004_070--Hb_005291_050 Hb_001004_070--Hb_003025_100 Hb_001004_070--Hb_012498_010 Hb_001004_070--Hb_027380_220 Hb_024128_020 Hb_024128_020 Hb_001004_070--Hb_024128_020 Hb_027380_220--Hb_000260_010 Hb_027380_220--Hb_005291_050 Hb_029879_070 Hb_029879_070 Hb_027380_220--Hb_029879_070 Hb_001912_110 Hb_001912_110 Hb_027380_220--Hb_001912_110 Hb_091296_010--Hb_003025_100 Hb_004159_020 Hb_004159_020 Hb_091296_010--Hb_004159_020 Hb_004108_160 Hb_004108_160 Hb_091296_010--Hb_004108_160 Hb_001818_100 Hb_001818_100 Hb_091296_010--Hb_001818_100 Hb_000205_140 Hb_000205_140 Hb_091296_010--Hb_000205_140 Hb_003025_100--Hb_001818_100 Hb_000260_350 Hb_000260_350 Hb_003025_100--Hb_000260_350 Hb_003025_100--Hb_012498_010 Hb_000116_270 Hb_000116_270 Hb_003025_100--Hb_000116_270 Hb_006478_020 Hb_006478_020 Hb_003025_100--Hb_006478_020 Hb_004109_080 Hb_004109_080 Hb_012498_010--Hb_004109_080 Hb_003683_020 Hb_003683_020 Hb_012498_010--Hb_003683_020 Hb_012498_010--Hb_005291_050 Hb_000156_010 Hb_000156_010 Hb_012498_010--Hb_000156_010 Hb_004567_090 Hb_004567_090 Hb_012498_010--Hb_004567_090 Hb_010142_020 Hb_010142_020 Hb_012498_010--Hb_010142_020 Hb_001163_100 Hb_001163_100 Hb_000260_010--Hb_001163_100 Hb_002809_050 Hb_002809_050 Hb_000260_010--Hb_002809_050 Hb_000260_010--Hb_001912_110 Hb_001377_490 Hb_001377_490 Hb_000260_010--Hb_001377_490 Hb_164010_030 Hb_164010_030 Hb_000260_010--Hb_164010_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.72194 5.21784 7.44006 14.7333 8.39415 10.1374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.53971 6.83379 13.643 10.1609 12.6936

CAGE analysis