Hb_001936_190

Information

Type -
Description -
Location Contig1936: 153158-156760
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05310g
description hypothetical protein
nr
ID KDP26622.1
description hypothetical protein JCGZ_17780 [Jatropha curcas]
swissprot
ID Q8VYR3
description Protein trichome birefringence-like 2 OS=Arabidopsis thaliana GN=TBL2 PE=2 SV=1
trembl
ID A0A067JRU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19357: 155621-155933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_190 0.0 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
2 Hb_000922_160 0.0930901779 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
3 Hb_028008_040 0.0947858754 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005725_240 0.1022116563 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
5 Hb_004531_170 0.1033190442 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
6 Hb_003580_050 0.1073650117 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
7 Hb_005365_010 0.1094877782 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
8 Hb_000486_020 0.1102022424 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
9 Hb_005730_110 0.110616276 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
10 Hb_000645_260 0.1110560457 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
11 Hb_001629_120 0.1118122722 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
12 Hb_000976_400 0.1122834921 - - synaptotagmin, putative [Ricinus communis]
13 Hb_001141_350 0.1126097784 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
14 Hb_002311_280 0.1141857038 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
15 Hb_001104_150 0.1161606663 - - PREDICTED: protein ROS1 [Jatropha curcas]
16 Hb_000212_410 0.1168361122 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
17 Hb_002890_160 0.1178451326 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
18 Hb_000283_030 0.1191117623 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
19 Hb_010534_040 0.1206731391 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
20 Hb_004218_200 0.1230685602 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001936_190 Hb_001936_190 Hb_000922_160 Hb_000922_160 Hb_001936_190--Hb_000922_160 Hb_028008_040 Hb_028008_040 Hb_001936_190--Hb_028008_040 Hb_005725_240 Hb_005725_240 Hb_001936_190--Hb_005725_240 Hb_004531_170 Hb_004531_170 Hb_001936_190--Hb_004531_170 Hb_003580_050 Hb_003580_050 Hb_001936_190--Hb_003580_050 Hb_005365_010 Hb_005365_010 Hb_001936_190--Hb_005365_010 Hb_070136_010 Hb_070136_010 Hb_000922_160--Hb_070136_010 Hb_002635_020 Hb_002635_020 Hb_000922_160--Hb_002635_020 Hb_006478_050 Hb_006478_050 Hb_000922_160--Hb_006478_050 Hb_002890_160 Hb_002890_160 Hb_000922_160--Hb_002890_160 Hb_093077_010 Hb_093077_010 Hb_000922_160--Hb_093077_010 Hb_028008_040--Hb_003580_050 Hb_002078_390 Hb_002078_390 Hb_028008_040--Hb_002078_390 Hb_004696_010 Hb_004696_010 Hb_028008_040--Hb_004696_010 Hb_012404_020 Hb_012404_020 Hb_028008_040--Hb_012404_020 Hb_028008_040--Hb_005365_010 Hb_000976_400 Hb_000976_400 Hb_005725_240--Hb_000976_400 Hb_000212_410 Hb_000212_410 Hb_005725_240--Hb_000212_410 Hb_084303_010 Hb_084303_010 Hb_005725_240--Hb_084303_010 Hb_000622_050 Hb_000622_050 Hb_005725_240--Hb_000622_050 Hb_000012_330 Hb_000012_330 Hb_005725_240--Hb_000012_330 Hb_000816_240 Hb_000816_240 Hb_005725_240--Hb_000816_240 Hb_004531_170--Hb_000622_050 Hb_000982_100 Hb_000982_100 Hb_004531_170--Hb_000982_100 Hb_004117_370 Hb_004117_370 Hb_004531_170--Hb_004117_370 Hb_004531_170--Hb_000012_330 Hb_000181_330 Hb_000181_330 Hb_004531_170--Hb_000181_330 Hb_000977_030 Hb_000977_030 Hb_003580_050--Hb_000977_030 Hb_000996_030 Hb_000996_030 Hb_003580_050--Hb_000996_030 Hb_003580_050--Hb_004696_010 Hb_002724_010 Hb_002724_010 Hb_003580_050--Hb_002724_010 Hb_004218_200 Hb_004218_200 Hb_003580_050--Hb_004218_200 Hb_001629_120 Hb_001629_120 Hb_005365_010--Hb_001629_120 Hb_000173_270 Hb_000173_270 Hb_005365_010--Hb_000173_270 Hb_000818_090 Hb_000818_090 Hb_005365_010--Hb_000818_090 Hb_007270_020 Hb_007270_020 Hb_005365_010--Hb_007270_020 Hb_001417_060 Hb_001417_060 Hb_005365_010--Hb_001417_060 Hb_044653_050 Hb_044653_050 Hb_005365_010--Hb_044653_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.485556 3.58273 13.0086 9.60005 0.270581 0.155605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0246164 0.174315 0 2.03586 10.6168

CAGE analysis