Hb_001942_010

Information

Type -
Description -
Location Contig1942: 1997-4198
Sequence    

Annotation

kegg
ID rcu:RCOM_1590900
description hypothetical protein
nr
ID KDP43920.1
description hypothetical protein JCGZ_20930 [Jatropha curcas]
swissprot
ID Q9M670
description Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=2 SV=1
trembl
ID A0A067LH55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20930 PE=4 SV=1
Gene Ontology
ID GO:0047134
description hypothetical protein JCGZ_20930

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19372: 3903-4229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001942_010 0.0 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
2 Hb_000046_120 0.0533735185 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
3 Hb_012395_090 0.0680178984 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
4 Hb_003435_030 0.0714331556 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
5 Hb_011013_040 0.0763454261 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
6 Hb_002702_010 0.0796091232 - - carbohydrate binding protein, putative [Ricinus communis]
7 Hb_010136_010 0.0815885181 - - Putative receptor-like protein kinase [Glycine soja]
8 Hb_084303_010 0.0849619247 - - conserved hypothetical protein [Ricinus communis]
9 Hb_033363_040 0.0851949775 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
10 Hb_004223_150 0.0859350356 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
11 Hb_018591_020 0.087484882 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
12 Hb_002007_220 0.0882584783 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
13 Hb_005337_100 0.0895105202 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
14 Hb_000002_500 0.090127948 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
15 Hb_008412_040 0.0930689852 - - unnamed protein product [Vitis vinifera]
16 Hb_000155_020 0.0942936287 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_004220_010 0.0943617938 - - PREDICTED: uncharacterized protein LOC105642366 [Jatropha curcas]
18 Hb_001148_110 0.0955234584 - - -
19 Hb_001750_020 0.0956027447 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
20 Hb_000486_020 0.0966488785 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]

Gene co-expression network

sample Hb_001942_010 Hb_001942_010 Hb_000046_120 Hb_000046_120 Hb_001942_010--Hb_000046_120 Hb_012395_090 Hb_012395_090 Hb_001942_010--Hb_012395_090 Hb_003435_030 Hb_003435_030 Hb_001942_010--Hb_003435_030 Hb_011013_040 Hb_011013_040 Hb_001942_010--Hb_011013_040 Hb_002702_010 Hb_002702_010 Hb_001942_010--Hb_002702_010 Hb_010136_010 Hb_010136_010 Hb_001942_010--Hb_010136_010 Hb_000046_120--Hb_003435_030 Hb_018591_020 Hb_018591_020 Hb_000046_120--Hb_018591_020 Hb_000002_500 Hb_000002_500 Hb_000046_120--Hb_000002_500 Hb_060253_010 Hb_060253_010 Hb_000046_120--Hb_060253_010 Hb_000046_120--Hb_012395_090 Hb_012395_090--Hb_011013_040 Hb_012395_090--Hb_002702_010 Hb_000155_020 Hb_000155_020 Hb_012395_090--Hb_000155_020 Hb_004223_150 Hb_004223_150 Hb_012395_090--Hb_004223_150 Hb_001159_050 Hb_001159_050 Hb_012395_090--Hb_001159_050 Hb_003435_030--Hb_060253_010 Hb_003435_030--Hb_010136_010 Hb_003435_030--Hb_018591_020 Hb_003435_030--Hb_002702_010 Hb_011013_040--Hb_000155_020 Hb_001266_010 Hb_001266_010 Hb_011013_040--Hb_001266_010 Hb_011013_040--Hb_002702_010 Hb_011013_040--Hb_001159_050 Hb_003038_230 Hb_003038_230 Hb_011013_040--Hb_003038_230 Hb_002702_010--Hb_004223_150 Hb_002702_010--Hb_000046_120 Hb_003371_080 Hb_003371_080 Hb_002702_010--Hb_003371_080 Hb_010136_010--Hb_000155_020 Hb_010136_010--Hb_011013_040 Hb_001115_070 Hb_001115_070 Hb_010136_010--Hb_001115_070 Hb_004017_030 Hb_004017_030 Hb_010136_010--Hb_004017_030 Hb_010136_010--Hb_012395_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0336216 0.74169 3.93374 2.77461 0.0262135 0.0118572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.11606 4.26083

CAGE analysis