Hb_001942_020

Information

Type -
Description -
Location Contig1942: 13774-18095
Sequence    

Annotation

kegg
ID pmum:103322327
description peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic
nr
ID XP_012065241.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
swissprot
ID O22870
description Peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-3 PE=1 SV=2
trembl
ID A0A067L672
description Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_20927 PE=4 SV=1
Gene Ontology
ID GO:0009534
description peptidyl-prolyl cis-trans isomerase fkbp16- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001942_020 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
2 Hb_022213_030 0.1548512698 - - PREDICTED: uncharacterized protein LOC105114631 [Populus euphratica]
3 Hb_001516_050 0.1627353733 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
4 Hb_001087_010 0.1809490231 - - PREDICTED: uncharacterized protein LOC105630042 [Jatropha curcas]
5 Hb_007527_040 0.1860845016 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
6 Hb_177343_010 0.1883609169 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
7 Hb_163145_030 0.1902868481 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
8 Hb_001109_160 0.1909670456 - - DNA binding protein, putative [Ricinus communis]
9 Hb_001266_120 0.1930106123 - - auxilin, putative [Ricinus communis]
10 Hb_010984_010 0.1952806416 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_002320_090 0.1958718683 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
12 Hb_164926_010 0.1962393713 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
13 Hb_004208_010 0.1979546602 - - PREDICTED: uncharacterized protein LOC105914588 [Setaria italica]
14 Hb_003029_140 0.1990109512 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
15 Hb_000803_220 0.1999631325 - - PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
16 Hb_006916_030 0.2015659336 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
17 Hb_001348_090 0.2031761411 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
18 Hb_000270_710 0.2037816128 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
19 Hb_010757_030 0.2040246375 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000906_070 0.2047374763 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001942_020 Hb_001942_020 Hb_022213_030 Hb_022213_030 Hb_001942_020--Hb_022213_030 Hb_001516_050 Hb_001516_050 Hb_001942_020--Hb_001516_050 Hb_001087_010 Hb_001087_010 Hb_001942_020--Hb_001087_010 Hb_007527_040 Hb_007527_040 Hb_001942_020--Hb_007527_040 Hb_177343_010 Hb_177343_010 Hb_001942_020--Hb_177343_010 Hb_163145_030 Hb_163145_030 Hb_001942_020--Hb_163145_030 Hb_000370_040 Hb_000370_040 Hb_022213_030--Hb_000370_040 Hb_022213_030--Hb_001516_050 Hb_001080_150 Hb_001080_150 Hb_022213_030--Hb_001080_150 Hb_022213_030--Hb_177343_010 Hb_000270_710 Hb_000270_710 Hb_022213_030--Hb_000270_710 Hb_000599_230 Hb_000599_230 Hb_001516_050--Hb_000599_230 Hb_001266_120 Hb_001266_120 Hb_001516_050--Hb_001266_120 Hb_002320_090 Hb_002320_090 Hb_001516_050--Hb_002320_090 Hb_001516_050--Hb_001080_150 Hb_000906_070 Hb_000906_070 Hb_001087_010--Hb_000906_070 Hb_000992_020 Hb_000992_020 Hb_001087_010--Hb_000992_020 Hb_010984_010 Hb_010984_010 Hb_001087_010--Hb_010984_010 Hb_000803_220 Hb_000803_220 Hb_001087_010--Hb_000803_220 Hb_007894_190 Hb_007894_190 Hb_001087_010--Hb_007894_190 Hb_000359_220 Hb_000359_220 Hb_001087_010--Hb_000359_220 Hb_001365_010 Hb_001365_010 Hb_007527_040--Hb_001365_010 Hb_001310_050 Hb_001310_050 Hb_007527_040--Hb_001310_050 Hb_007527_040--Hb_177343_010 Hb_007527_040--Hb_022213_030 Hb_000454_160 Hb_000454_160 Hb_007527_040--Hb_000454_160 Hb_000270_660 Hb_000270_660 Hb_177343_010--Hb_000270_660 Hb_177343_010--Hb_163145_030 Hb_059741_010 Hb_059741_010 Hb_177343_010--Hb_059741_010 Hb_002164_020 Hb_002164_020 Hb_177343_010--Hb_002164_020 Hb_011310_050 Hb_011310_050 Hb_177343_010--Hb_011310_050 Hb_010175_030 Hb_010175_030 Hb_177343_010--Hb_010175_030 Hb_005914_210 Hb_005914_210 Hb_163145_030--Hb_005914_210 Hb_001009_260 Hb_001009_260 Hb_163145_030--Hb_001009_260 Hb_130589_010 Hb_130589_010 Hb_163145_030--Hb_130589_010 Hb_003025_140 Hb_003025_140 Hb_163145_030--Hb_003025_140 Hb_000640_260 Hb_000640_260 Hb_163145_030--Hb_000640_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.265501 0.182952 0.401384 0.381463 0.0871856 0.212402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0988851 0.310736 1.20685

CAGE analysis