Hb_001943_010

Information

Type -
Description -
Location Contig1943: 12066-14922
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07790g
description hypothetical protein
nr
ID XP_012069892.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
swissprot
ID Q8W034
description Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1
trembl
ID A0A067L794
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02373 PE=4 SV=1
Gene Ontology
ID GO:0019013
description heterogeneous nuclear ribonucleoprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19374: 12067-15594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001943_010 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
2 Hb_005205_020 0.0702426434 - - PREDICTED: protein FAM135B-like isoform X2 [Jatropha curcas]
3 Hb_000370_030 0.0809313502 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
4 Hb_000184_130 0.0830026385 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
5 Hb_025012_010 0.0840396049 - - PREDICTED: importin-4 [Vitis vinifera]
6 Hb_000316_030 0.0856219287 - - zinc finger protein, putative [Ricinus communis]
7 Hb_001771_130 0.087747631 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
8 Hb_002067_150 0.0882492062 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
9 Hb_004452_100 0.0884101525 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
10 Hb_001040_160 0.0884430833 - - glutaredoxin, grx, putative [Ricinus communis]
11 Hb_001609_010 0.0902747384 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
12 Hb_000209_020 0.0909926437 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
13 Hb_000568_040 0.0928035425 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]
14 Hb_000915_050 0.0930817959 - - conserved hypothetical protein [Ricinus communis]
15 Hb_042487_010 0.0933791485 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
16 Hb_007904_220 0.0941825713 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
17 Hb_001871_040 0.0942582031 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
18 Hb_001307_140 0.0949953803 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
19 Hb_011318_010 0.0971092755 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
20 Hb_063047_010 0.0976696546 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001943_010 Hb_001943_010 Hb_005205_020 Hb_005205_020 Hb_001943_010--Hb_005205_020 Hb_000370_030 Hb_000370_030 Hb_001943_010--Hb_000370_030 Hb_000184_130 Hb_000184_130 Hb_001943_010--Hb_000184_130 Hb_025012_010 Hb_025012_010 Hb_001943_010--Hb_025012_010 Hb_000316_030 Hb_000316_030 Hb_001943_010--Hb_000316_030 Hb_001771_130 Hb_001771_130 Hb_001943_010--Hb_001771_130 Hb_007904_220 Hb_007904_220 Hb_005205_020--Hb_007904_220 Hb_002067_150 Hb_002067_150 Hb_005205_020--Hb_002067_150 Hb_001322_210 Hb_001322_210 Hb_005205_020--Hb_001322_210 Hb_005205_020--Hb_001771_130 Hb_005205_020--Hb_025012_010 Hb_000370_030--Hb_000184_130 Hb_000300_280 Hb_000300_280 Hb_000370_030--Hb_000300_280 Hb_000457_060 Hb_000457_060 Hb_000370_030--Hb_000457_060 Hb_004310_060 Hb_004310_060 Hb_000370_030--Hb_004310_060 Hb_000568_040 Hb_000568_040 Hb_000370_030--Hb_000568_040 Hb_000370_030--Hb_000316_030 Hb_000915_050 Hb_000915_050 Hb_000184_130--Hb_000915_050 Hb_004204_020 Hb_004204_020 Hb_000184_130--Hb_004204_020 Hb_003362_040 Hb_003362_040 Hb_000184_130--Hb_003362_040 Hb_002039_010 Hb_002039_010 Hb_000184_130--Hb_002039_010 Hb_004734_060 Hb_004734_060 Hb_000184_130--Hb_004734_060 Hb_002027_270 Hb_002027_270 Hb_025012_010--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_025012_010--Hb_004619_050 Hb_000347_130 Hb_000347_130 Hb_025012_010--Hb_000347_130 Hb_025012_010--Hb_007904_220 Hb_003428_070 Hb_003428_070 Hb_025012_010--Hb_003428_070 Hb_001040_160 Hb_001040_160 Hb_025012_010--Hb_001040_160 Hb_000316_030--Hb_001040_160 Hb_003434_060 Hb_003434_060 Hb_000316_030--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000316_030--Hb_000390_060 Hb_001609_010 Hb_001609_010 Hb_000316_030--Hb_001609_010 Hb_063047_010 Hb_063047_010 Hb_000316_030--Hb_063047_010 Hb_002097_090 Hb_002097_090 Hb_000316_030--Hb_002097_090 Hb_001437_180 Hb_001437_180 Hb_001771_130--Hb_001437_180 Hb_000011_080 Hb_000011_080 Hb_001771_130--Hb_000011_080 Hb_001871_040 Hb_001871_040 Hb_001771_130--Hb_001871_040 Hb_001771_130--Hb_004734_060 Hb_000386_030 Hb_000386_030 Hb_001771_130--Hb_000386_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.1702 44.9437 7.58031 23.1957 70.7767 148.192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.9168 29.77 58.3669 62.4462 27.7563

CAGE analysis