Hb_001943_020

Information

Type -
Description -
Location Contig1943: 19462-23017
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07850g
description POPTRDRAFT_1089452; cyclopropane-fatty-acyl-phospholipid synthase family protein
nr
ID XP_011041421.1
description PREDICTED: (S)-coclaurine N-methyltransferase-like, partial [Populus euphratica]
swissprot
ID O53732
description Tuberculostearic acid methyltransferase UfaA1 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=ufaA1 PE=1 SV=3
trembl
ID B9HSS0
description Cyclopropane-fatty-acyl-phospholipid synthase family protein OS=Populus trichocarpa GN=POPTR_0010s07850g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19375: 23487-23868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001943_020 0.0 - - PREDICTED: (S)-coclaurine N-methyltransferase-like, partial [Populus euphratica]
2 Hb_183672_010 0.1976652832 - - PREDICTED: (S)-tetrahydroprotoberberine N-methyltransferase isoform X3 [Jatropha curcas]
3 Hb_000226_100 0.2506600211 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
4 Hb_000440_030 0.2636139215 - - 50 kDa protein [Hevea brasiliensis]
5 Hb_000705_280 0.2646844065 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
6 Hb_000190_240 0.2659705985 - - unnamed protein product [Coffea canephora]
7 Hb_002078_170 0.2746675199 - - ELMO/CED-12 domain-containing protein isoform 3 [Theobroma cacao]
8 Hb_025311_020 0.277210978 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
9 Hb_006280_010 0.2907703967 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
10 Hb_007975_040 0.3079126679 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
11 Hb_001235_080 0.3140416439 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005599_060 0.3170061773 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
13 Hb_029866_030 0.3269738317 - - hypothetical protein CICLE_v10006898mg [Citrus clementina]
14 Hb_003002_030 0.334678464 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_000264_220 0.3388033135 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
16 Hb_000276_050 0.3408456644 - - -
17 Hb_001693_040 0.3413048589 - - -
18 Hb_004934_080 0.3480523468 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
19 Hb_012424_010 0.3489218638 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
20 Hb_004316_090 0.3491144253 - - hypothetical protein JCGZ_21197 [Jatropha curcas]

Gene co-expression network

sample Hb_001943_020 Hb_001943_020 Hb_183672_010 Hb_183672_010 Hb_001943_020--Hb_183672_010 Hb_000226_100 Hb_000226_100 Hb_001943_020--Hb_000226_100 Hb_000440_030 Hb_000440_030 Hb_001943_020--Hb_000440_030 Hb_000705_280 Hb_000705_280 Hb_001943_020--Hb_000705_280 Hb_000190_240 Hb_000190_240 Hb_001943_020--Hb_000190_240 Hb_002078_170 Hb_002078_170 Hb_001943_020--Hb_002078_170 Hb_183672_010--Hb_000190_240 Hb_001235_080 Hb_001235_080 Hb_183672_010--Hb_001235_080 Hb_183672_010--Hb_000440_030 Hb_005599_060 Hb_005599_060 Hb_183672_010--Hb_005599_060 Hb_183672_010--Hb_002078_170 Hb_000226_100--Hb_000440_030 Hb_000264_220 Hb_000264_220 Hb_000226_100--Hb_000264_220 Hb_000226_100--Hb_000705_280 Hb_000184_200 Hb_000184_200 Hb_000226_100--Hb_000184_200 Hb_007975_040 Hb_007975_040 Hb_000226_100--Hb_007975_040 Hb_000440_030--Hb_000705_280 Hb_000638_040 Hb_000638_040 Hb_000440_030--Hb_000638_040 Hb_004316_090 Hb_004316_090 Hb_000440_030--Hb_004316_090 Hb_000440_030--Hb_007975_040 Hb_074238_010 Hb_074238_010 Hb_000440_030--Hb_074238_010 Hb_006355_050 Hb_006355_050 Hb_000705_280--Hb_006355_050 Hb_000705_280--Hb_000638_040 Hb_000083_040 Hb_000083_040 Hb_000705_280--Hb_000083_040 Hb_060455_010 Hb_060455_010 Hb_000705_280--Hb_060455_010 Hb_008839_030 Hb_008839_030 Hb_000705_280--Hb_008839_030 Hb_025311_020 Hb_025311_020 Hb_000190_240--Hb_025311_020 Hb_000190_240--Hb_000440_030 Hb_000190_240--Hb_005599_060 Hb_006280_010 Hb_006280_010 Hb_000190_240--Hb_006280_010 Hb_001287_010 Hb_001287_010 Hb_002078_170--Hb_001287_010 Hb_002078_170--Hb_005599_060 Hb_002150_060 Hb_002150_060 Hb_002078_170--Hb_002150_060 Hb_006153_080 Hb_006153_080 Hb_002078_170--Hb_006153_080 Hb_001310_090 Hb_001310_090 Hb_002078_170--Hb_001310_090 Hb_001486_010 Hb_001486_010 Hb_002078_170--Hb_001486_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0656174 0 0.0489305 0.115134 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.037435 0 0.879422 0.0117826 0.122332

CAGE analysis