Hb_001944_030

Information

Type -
Description -
Location Contig1944: 96742-104399
Sequence    

Annotation

kegg
ID egr:104420199
description uncharacterized LOC104420199
nr
ID XP_002310021.2
description hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HFX6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s06520g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19380: 97159-98945 , PASA_asmbl_19381: 99556-99787
cDNA
(Sanger)
(ID:Location)		 052_K20.ab1: 98198-98945

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001944_030 0.0 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
2 Hb_001214_170 0.1830622024 - - pyruvate kinase family protein [Medicago truncatula]
3 Hb_004330_030 0.2368802093 - - -
4 Hb_000260_370 0.2403014642 - - protein phosphatase-1, putative [Ricinus communis]
5 Hb_007645_120 0.2418220191 - - hypothetical protein POPTR_0006s05370g [Populus trichocarpa]
6 Hb_005535_060 0.2444166323 - - -
7 Hb_000189_430 0.2481496489 - - unnamed protein product [Vitis vinifera]
8 Hb_059301_010 0.253147799 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
9 Hb_167508_010 0.2565065879 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
10 Hb_005568_100 0.256693312 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]
11 Hb_000789_130 0.2578221895 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
12 Hb_000608_040 0.258812905 - - -
13 Hb_003125_140 0.2603994901 - - PREDICTED: uncharacterized protein LOC105648796 [Jatropha curcas]
14 Hb_118346_010 0.2623332668 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
15 Hb_160233_020 0.2624023812 - - -
16 Hb_003740_010 0.2633833044 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002232_280 0.2646544968 - - PREDICTED: pleiotropic drug resistance protein 1-like isoform X6 [Jatropha curcas]
18 Hb_005608_010 0.2649552244 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
19 Hb_001703_130 0.2664896134 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
20 Hb_000816_010 0.2667565847 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001944_030 Hb_001944_030 Hb_001214_170 Hb_001214_170 Hb_001944_030--Hb_001214_170 Hb_004330_030 Hb_004330_030 Hb_001944_030--Hb_004330_030 Hb_000260_370 Hb_000260_370 Hb_001944_030--Hb_000260_370 Hb_007645_120 Hb_007645_120 Hb_001944_030--Hb_007645_120 Hb_005535_060 Hb_005535_060 Hb_001944_030--Hb_005535_060 Hb_000189_430 Hb_000189_430 Hb_001944_030--Hb_000189_430 Hb_161023_010 Hb_161023_010 Hb_001214_170--Hb_161023_010 Hb_160233_020 Hb_160233_020 Hb_001214_170--Hb_160233_020 Hb_167508_010 Hb_167508_010 Hb_001214_170--Hb_167508_010 Hb_007926_010 Hb_007926_010 Hb_001214_170--Hb_007926_010 Hb_113823_010 Hb_113823_010 Hb_001214_170--Hb_113823_010 Hb_000146_060 Hb_000146_060 Hb_004330_030--Hb_000146_060 Hb_004330_030--Hb_001214_170 Hb_005608_010 Hb_005608_010 Hb_004330_030--Hb_005608_010 Hb_007805_020 Hb_007805_020 Hb_004330_030--Hb_007805_020 Hb_118346_010 Hb_118346_010 Hb_004330_030--Hb_118346_010 Hb_002965_030 Hb_002965_030 Hb_000260_370--Hb_002965_030 Hb_004296_010 Hb_004296_010 Hb_000260_370--Hb_004296_010 Hb_002999_060 Hb_002999_060 Hb_000260_370--Hb_002999_060 Hb_000422_110 Hb_000422_110 Hb_000260_370--Hb_000422_110 Hb_006618_040 Hb_006618_040 Hb_000260_370--Hb_006618_040 Hb_013394_060 Hb_013394_060 Hb_000260_370--Hb_013394_060 Hb_003125_140 Hb_003125_140 Hb_007645_120--Hb_003125_140 Hb_156144_030 Hb_156144_030 Hb_007645_120--Hb_156144_030 Hb_000120_570 Hb_000120_570 Hb_007645_120--Hb_000120_570 Hb_102129_070 Hb_102129_070 Hb_007645_120--Hb_102129_070 Hb_000453_140 Hb_000453_140 Hb_007645_120--Hb_000453_140 Hb_006831_100 Hb_006831_100 Hb_007645_120--Hb_006831_100 Hb_000608_040 Hb_000608_040 Hb_005535_060--Hb_000608_040 Hb_001703_130 Hb_001703_130 Hb_005535_060--Hb_001703_130 Hb_002805_170 Hb_002805_170 Hb_005535_060--Hb_002805_170 Hb_012184_050 Hb_012184_050 Hb_005535_060--Hb_012184_050 Hb_001473_190 Hb_001473_190 Hb_005535_060--Hb_001473_190 Hb_063409_020 Hb_063409_020 Hb_005535_060--Hb_063409_020 Hb_000318_240 Hb_000318_240 Hb_000189_430--Hb_000318_240 Hb_129459_010 Hb_129459_010 Hb_000189_430--Hb_129459_010 Hb_001767_040 Hb_001767_040 Hb_000189_430--Hb_001767_040 Hb_001269_310 Hb_001269_310 Hb_000189_430--Hb_001269_310 Hb_005548_030 Hb_005548_030 Hb_000189_430--Hb_005548_030 Hb_000997_150 Hb_000997_150 Hb_000189_430--Hb_000997_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8474 7.33116 9.35415 2.72574 20.2131 1.00617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.453596 0.458583 0.646972 1.48339 1.1285

CAGE analysis