Hb_001946_030

Information

Type -
Description -
Location Contig1946: 15898-17853
Sequence    

Annotation

kegg
ID rcu:RCOM_0224460
description grr1, plant, putative
nr
ID XP_002524506.1
description grr1, plant, putative [Ricinus communis]
swissprot
ID Q9SKK0
description EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1
trembl
ID B9SET7
description Grr1, plant, putative OS=Ricinus communis GN=RCOM_0224460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19385: 14991-18239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_030 0.0 - - grr1, plant, putative [Ricinus communis]
2 Hb_000005_250 0.1866443264 - - conserved hypothetical protein [Ricinus communis]
3 Hb_028811_010 0.1907923958 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
4 Hb_183623_010 0.2037278685 - - aldo-keto reductase, putative [Ricinus communis]
5 Hb_001206_090 0.2127060464 - - pyruvate decarboxylase [Hevea brasiliensis]
6 Hb_001623_160 0.2140377649 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
7 Hb_004079_080 0.2163896876 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
8 Hb_014894_010 0.2187402799 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
9 Hb_007943_160 0.2198088971 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
10 Hb_039145_010 0.2239834459 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
11 Hb_000067_010 0.2246902589 - - hypothetical protein B456_002G147500 [Gossypium raimondii]
12 Hb_108329_020 0.2261254191 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
13 Hb_004374_120 0.2285057951 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
14 Hb_000928_040 0.2292697938 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000297_020 0.2316621548 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
16 Hb_001246_030 0.2331798198 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
17 Hb_012545_090 0.2335965159 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
18 Hb_007747_140 0.2357770736 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
19 Hb_000417_320 0.2362012598 - - hypothetical protein CICLE_v10000333mg [Citrus clementina]
20 Hb_001971_060 0.2370053436 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]

Gene co-expression network

sample Hb_001946_030 Hb_001946_030 Hb_000005_250 Hb_000005_250 Hb_001946_030--Hb_000005_250 Hb_028811_010 Hb_028811_010 Hb_001946_030--Hb_028811_010 Hb_183623_010 Hb_183623_010 Hb_001946_030--Hb_183623_010 Hb_001206_090 Hb_001206_090 Hb_001946_030--Hb_001206_090 Hb_001623_160 Hb_001623_160 Hb_001946_030--Hb_001623_160 Hb_004079_080 Hb_004079_080 Hb_001946_030--Hb_004079_080 Hb_014894_010 Hb_014894_010 Hb_000005_250--Hb_014894_010 Hb_001258_060 Hb_001258_060 Hb_000005_250--Hb_001258_060 Hb_001246_030 Hb_001246_030 Hb_000005_250--Hb_001246_030 Hb_010334_020 Hb_010334_020 Hb_000005_250--Hb_010334_020 Hb_039145_010 Hb_039145_010 Hb_000005_250--Hb_039145_010 Hb_001486_030 Hb_001486_030 Hb_028811_010--Hb_001486_030 Hb_028811_010--Hb_001623_160 Hb_001214_090 Hb_001214_090 Hb_028811_010--Hb_001214_090 Hb_000414_110 Hb_000414_110 Hb_028811_010--Hb_000414_110 Hb_011909_010 Hb_011909_010 Hb_028811_010--Hb_011909_010 Hb_004064_010 Hb_004064_010 Hb_028811_010--Hb_004064_010 Hb_001355_130 Hb_001355_130 Hb_183623_010--Hb_001355_130 Hb_000297_020 Hb_000297_020 Hb_183623_010--Hb_000297_020 Hb_138710_010 Hb_138710_010 Hb_183623_010--Hb_138710_010 Hb_094437_060 Hb_094437_060 Hb_183623_010--Hb_094437_060 Hb_000300_130 Hb_000300_130 Hb_183623_010--Hb_000300_130 Hb_000645_210 Hb_000645_210 Hb_001206_090--Hb_000645_210 Hb_000165_210 Hb_000165_210 Hb_001206_090--Hb_000165_210 Hb_127886_010 Hb_127886_010 Hb_001206_090--Hb_127886_010 Hb_000098_310 Hb_000098_310 Hb_001206_090--Hb_000098_310 Hb_000928_040 Hb_000928_040 Hb_001206_090--Hb_000928_040 Hb_004195_110 Hb_004195_110 Hb_001206_090--Hb_004195_110 Hb_001623_160--Hb_001214_090 Hb_000381_110 Hb_000381_110 Hb_001623_160--Hb_000381_110 Hb_003038_140 Hb_003038_140 Hb_001623_160--Hb_003038_140 Hb_001971_060 Hb_001971_060 Hb_001623_160--Hb_001971_060 Hb_001623_160--Hb_004079_080 Hb_001332_040 Hb_001332_040 Hb_001623_160--Hb_001332_040 Hb_000621_020 Hb_000621_020 Hb_004079_080--Hb_000621_020 Hb_004079_080--Hb_001214_090 Hb_004079_080--Hb_001971_060 Hb_016522_010 Hb_016522_010 Hb_004079_080--Hb_016522_010 Hb_100147_010 Hb_100147_010 Hb_004079_080--Hb_100147_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.0213 44.8862 5.20928 47.526 7.12222 15.0487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3444 27.2658 99.414 209.038 18.6438

CAGE analysis