Hb_001946_120

Information

Type -
Description -
Location Contig1946: 161575-164387
Sequence    

Annotation

kegg
ID vvi:100243923
description SPX domain-containing protein 2-like
nr
ID XP_012078788.1
description PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
swissprot
ID O48781
description SPX domain-containing protein 2 OS=Arabidopsis thaliana GN=SPX2 PE=2 SV=1
trembl
ID A0A067KKR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13334 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_120 0.0 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
2 Hb_005694_120 0.0434200898 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
3 Hb_153258_040 0.0644549651 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
4 Hb_001007_070 0.0702066917 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
5 Hb_044478_010 0.0720582009 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
6 Hb_000984_160 0.0767863727 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
7 Hb_000099_120 0.0769815432 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
8 Hb_011214_130 0.0772908286 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 [Jatropha curcas]
9 Hb_005111_040 0.0788005325 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
10 Hb_001999_230 0.0789336125 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
11 Hb_004970_060 0.0797706003 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
12 Hb_000847_030 0.0799595585 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
13 Hb_033363_040 0.0816191641 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
14 Hb_003025_160 0.0839302595 - - Protein HVA22, putative [Ricinus communis]
15 Hb_000254_130 0.0847336551 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
16 Hb_002259_090 0.086875871 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
17 Hb_005569_010 0.0893951896 - - Heme-binding protein, putative [Ricinus communis]
18 Hb_006970_030 0.0932049011 - - synaptotagmin, putative [Ricinus communis]
19 Hb_000392_470 0.0940217201 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004835_020 0.0943228566 - - PREDICTED: receptor-like protein 12 [Populus euphratica]

Gene co-expression network

sample Hb_001946_120 Hb_001946_120 Hb_005694_120 Hb_005694_120 Hb_001946_120--Hb_005694_120 Hb_153258_040 Hb_153258_040 Hb_001946_120--Hb_153258_040 Hb_001007_070 Hb_001007_070 Hb_001946_120--Hb_001007_070 Hb_044478_010 Hb_044478_010 Hb_001946_120--Hb_044478_010 Hb_000984_160 Hb_000984_160 Hb_001946_120--Hb_000984_160 Hb_000099_120 Hb_000099_120 Hb_001946_120--Hb_000099_120 Hb_000847_030 Hb_000847_030 Hb_005694_120--Hb_000847_030 Hb_005694_120--Hb_001007_070 Hb_005111_040 Hb_005111_040 Hb_005694_120--Hb_005111_040 Hb_005694_120--Hb_044478_010 Hb_005694_120--Hb_000984_160 Hb_153258_040--Hb_044478_010 Hb_004970_060 Hb_004970_060 Hb_153258_040--Hb_004970_060 Hb_003777_080 Hb_003777_080 Hb_153258_040--Hb_003777_080 Hb_001999_230 Hb_001999_230 Hb_153258_040--Hb_001999_230 Hb_006970_030 Hb_006970_030 Hb_153258_040--Hb_006970_030 Hb_001007_070--Hb_001999_230 Hb_001007_070--Hb_000099_120 Hb_005054_120 Hb_005054_120 Hb_001007_070--Hb_005054_120 Hb_002259_090 Hb_002259_090 Hb_001007_070--Hb_002259_090 Hb_009193_070 Hb_009193_070 Hb_001007_070--Hb_009193_070 Hb_000254_130 Hb_000254_130 Hb_001007_070--Hb_000254_130 Hb_002042_210 Hb_002042_210 Hb_044478_010--Hb_002042_210 Hb_131466_010 Hb_131466_010 Hb_044478_010--Hb_131466_010 Hb_044478_010--Hb_005111_040 Hb_044478_010--Hb_001999_230 Hb_005569_010 Hb_005569_010 Hb_000984_160--Hb_005569_010 Hb_131876_010 Hb_131876_010 Hb_000984_160--Hb_131876_010 Hb_004052_030 Hb_004052_030 Hb_000984_160--Hb_004052_030 Hb_069696_020 Hb_069696_020 Hb_000984_160--Hb_069696_020 Hb_000984_160--Hb_000847_030 Hb_000099_120--Hb_001999_230 Hb_000392_470 Hb_000392_470 Hb_000099_120--Hb_000392_470 Hb_001564_120 Hb_001564_120 Hb_000099_120--Hb_001564_120 Hb_004338_050 Hb_004338_050 Hb_000099_120--Hb_004338_050 Hb_000099_120--Hb_000254_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.39374 8.33262 6.51827 0.0608031 0.0309736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.185131 0.058254 0 0.640868 16.5844

CAGE analysis