Hb_001946_140

Information

Type -
Description -
Location Contig1946: 177053-179983
Sequence    

Annotation

kegg
ID mdm:103400421
description heme oxygenase 1, chloroplastic-like
nr
ID XP_012078785.1
description PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
swissprot
ID O48782
description Heme oxygenase 1, chloroplastic OS=Arabidopsis thaliana GN=HO1 PE=1 SV=2
trembl
ID A0A067KKR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13329 PE=4 SV=1
Gene Ontology
ID GO:0009536
description heme oxygenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19395: 177059-179979 , PASA_asmbl_19396: 177119-179979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_140 0.0 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
2 Hb_000035_240 0.0932287901 - - conserved hypothetical protein [Ricinus communis]
3 Hb_021650_040 0.0970284976 - - EG2771 [Manihot esculenta]
4 Hb_004440_020 0.1014280293 - - AP-3 complex subunit sigma-1, putative [Ricinus communis]
5 Hb_001301_340 0.1014357054 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
6 Hb_007534_050 0.1024542573 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000163_100 0.1037870489 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
8 Hb_000012_250 0.1080241949 - - hypothetical protein L484_019524 [Morus notabilis]
9 Hb_107879_010 0.1117395617 - - phosphoglycerate mutase, putative [Ricinus communis]
10 Hb_025194_060 0.1129664902 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_002759_190 0.1150453923 - - PREDICTED: protein NLRC3 [Jatropha curcas]
12 Hb_000413_240 0.1154516876 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
13 Hb_001022_030 0.11744308 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
14 Hb_005127_030 0.1175471615 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_003747_230 0.1180672242 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
16 Hb_000317_260 0.1182064657 - - unknown [Populus trichocarpa]
17 Hb_000394_180 0.1189618844 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
18 Hb_000365_130 0.1195872484 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
19 Hb_012305_100 0.1209441189 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
20 Hb_000003_780 0.1210100981 - - hexokinase [Manihot esculenta]

Gene co-expression network

sample Hb_001946_140 Hb_001946_140 Hb_000035_240 Hb_000035_240 Hb_001946_140--Hb_000035_240 Hb_021650_040 Hb_021650_040 Hb_001946_140--Hb_021650_040 Hb_004440_020 Hb_004440_020 Hb_001946_140--Hb_004440_020 Hb_001301_340 Hb_001301_340 Hb_001946_140--Hb_001301_340 Hb_007534_050 Hb_007534_050 Hb_001946_140--Hb_007534_050 Hb_000163_100 Hb_000163_100 Hb_001946_140--Hb_000163_100 Hb_000035_240--Hb_001301_340 Hb_001329_090 Hb_001329_090 Hb_000035_240--Hb_001329_090 Hb_000390_090 Hb_000390_090 Hb_000035_240--Hb_000390_090 Hb_000008_370 Hb_000008_370 Hb_000035_240--Hb_000008_370 Hb_009252_060 Hb_009252_060 Hb_000035_240--Hb_009252_060 Hb_025194_060 Hb_025194_060 Hb_021650_040--Hb_025194_060 Hb_003304_030 Hb_003304_030 Hb_021650_040--Hb_003304_030 Hb_001946_160 Hb_001946_160 Hb_021650_040--Hb_001946_160 Hb_019053_060 Hb_019053_060 Hb_021650_040--Hb_019053_060 Hb_001769_170 Hb_001769_170 Hb_021650_040--Hb_001769_170 Hb_107879_010 Hb_107879_010 Hb_004440_020--Hb_107879_010 Hb_000690_160 Hb_000690_160 Hb_004440_020--Hb_000690_160 Hb_001195_460 Hb_001195_460 Hb_004440_020--Hb_001195_460 Hb_002876_220 Hb_002876_220 Hb_004440_020--Hb_002876_220 Hb_003077_020 Hb_003077_020 Hb_004440_020--Hb_003077_020 Hb_012022_150 Hb_012022_150 Hb_004440_020--Hb_012022_150 Hb_007894_050 Hb_007894_050 Hb_001301_340--Hb_007894_050 Hb_000317_260 Hb_000317_260 Hb_001301_340--Hb_000317_260 Hb_000394_180 Hb_000394_180 Hb_001301_340--Hb_000394_180 Hb_001369_790 Hb_001369_790 Hb_001301_340--Hb_001369_790 Hb_000392_550 Hb_000392_550 Hb_001301_340--Hb_000392_550 Hb_004440_060 Hb_004440_060 Hb_007534_050--Hb_004440_060 Hb_055619_010 Hb_055619_010 Hb_007534_050--Hb_055619_010 Hb_005127_030 Hb_005127_030 Hb_007534_050--Hb_005127_030 Hb_001578_020 Hb_001578_020 Hb_007534_050--Hb_001578_020 Hb_002811_010 Hb_002811_010 Hb_007534_050--Hb_002811_010 Hb_007534_050--Hb_000317_260 Hb_000413_240 Hb_000413_240 Hb_000163_100--Hb_000413_240 Hb_000413_060 Hb_000413_060 Hb_000163_100--Hb_000413_060 Hb_001863_380 Hb_001863_380 Hb_000163_100--Hb_001863_380 Hb_002946_190 Hb_002946_190 Hb_000163_100--Hb_002946_190 Hb_000012_250 Hb_000012_250 Hb_000163_100--Hb_000012_250 Hb_000429_040 Hb_000429_040 Hb_000163_100--Hb_000429_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9775 3.84739 48.5845 24.0298 11.1419 18.8614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.0672 32.5259 17.9224 14.3588 39.2365

CAGE analysis