Hb_001946_160

Information

Type -
Description -
Location Contig1946: 181828-187725
Sequence    

Annotation

kegg
ID rcu:RCOM_0223710
description hypothetical protein
nr
ID AAK25754.1
description putative chaperon P13.9 [Castanea sativa]
swissprot
ID -
description -
trembl
ID Q9ATG0
description Putative chaperon P13.9 OS=Castanea sativa PE=2 SV=1
Gene Ontology
ID GO:0009507
description hsp40 cysteine-rich domain superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19397: 181840-187706
cDNA
(Sanger)
(ID:Location)		 008_I03.ab1: 182105-187702

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_160 0.0 - - putative chaperon P13.9 [Castanea sativa]
2 Hb_005276_010 0.0634712464 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
3 Hb_000941_100 0.0742655308 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
4 Hb_025194_060 0.0884431781 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_005127_030 0.0894932041 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_006538_120 0.0945625998 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
7 Hb_002053_010 0.0947693108 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
8 Hb_001769_170 0.0955119559 - - 50S ribosomal protein L31, putative [Ricinus communis]
9 Hb_019053_060 0.0971440931 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
10 Hb_004440_060 0.0979748174 - - aldose 1-epimerase, putative [Ricinus communis]
11 Hb_029920_030 0.0994650354 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
12 Hb_021650_040 0.1012251351 - - EG2771 [Manihot esculenta]
13 Hb_006907_060 0.101374094 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
14 Hb_001863_120 0.102833494 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
15 Hb_001410_070 0.1033441401 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
16 Hb_008695_200 0.1051648503 - - Protein grpE, putative [Ricinus communis]
17 Hb_000480_040 0.1065170677 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
18 Hb_009775_010 0.1065663277 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
19 Hb_003304_030 0.1066020031 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_005539_010 0.1070281152 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]

Gene co-expression network

sample Hb_001946_160 Hb_001946_160 Hb_005276_010 Hb_005276_010 Hb_001946_160--Hb_005276_010 Hb_000941_100 Hb_000941_100 Hb_001946_160--Hb_000941_100 Hb_025194_060 Hb_025194_060 Hb_001946_160--Hb_025194_060 Hb_005127_030 Hb_005127_030 Hb_001946_160--Hb_005127_030 Hb_006538_120 Hb_006538_120 Hb_001946_160--Hb_006538_120 Hb_002053_010 Hb_002053_010 Hb_001946_160--Hb_002053_010 Hb_005276_010--Hb_000941_100 Hb_000164_140 Hb_000164_140 Hb_005276_010--Hb_000164_140 Hb_029920_030 Hb_029920_030 Hb_005276_010--Hb_029920_030 Hb_016461_030 Hb_016461_030 Hb_005276_010--Hb_016461_030 Hb_000816_200 Hb_000816_200 Hb_005276_010--Hb_000816_200 Hb_003053_110 Hb_003053_110 Hb_000941_100--Hb_003053_110 Hb_048093_010 Hb_048093_010 Hb_000941_100--Hb_048093_010 Hb_001195_770 Hb_001195_770 Hb_000941_100--Hb_001195_770 Hb_012150_030 Hb_012150_030 Hb_000941_100--Hb_012150_030 Hb_006907_060 Hb_006907_060 Hb_000941_100--Hb_006907_060 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010 Hb_021650_040 Hb_021650_040 Hb_025194_060--Hb_021650_040 Hb_003304_030 Hb_003304_030 Hb_025194_060--Hb_003304_030 Hb_019053_060 Hb_019053_060 Hb_025194_060--Hb_019053_060 Hb_025194_060--Hb_005127_030 Hb_025194_060--Hb_005539_010 Hb_005127_030--Hb_006538_120 Hb_000221_140 Hb_000221_140 Hb_005127_030--Hb_000221_140 Hb_007534_050 Hb_007534_050 Hb_005127_030--Hb_007534_050 Hb_005731_160 Hb_005731_160 Hb_005127_030--Hb_005731_160 Hb_005127_030--Hb_012150_030 Hb_000212_440 Hb_000212_440 Hb_005127_030--Hb_000212_440 Hb_006538_120--Hb_000221_140 Hb_009775_010 Hb_009775_010 Hb_006538_120--Hb_009775_010 Hb_006538_120--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_006538_120--Hb_001410_070 Hb_006538_120--Hb_000941_100 Hb_001789_200 Hb_001789_200 Hb_002053_010--Hb_001789_200 Hb_008695_200 Hb_008695_200 Hb_002053_010--Hb_008695_200 Hb_016219_030 Hb_016219_030 Hb_002053_010--Hb_016219_030 Hb_001369_790 Hb_001369_790 Hb_002053_010--Hb_001369_790 Hb_004440_060 Hb_004440_060 Hb_002053_010--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_002053_010--Hb_000086_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3298 13.4931 64.3583 33.5718 13.3769 25.6005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.047 36.3488 18.2215 15.8379 86.1587

CAGE analysis