Hb_001946_210

Information

Type -
Description -
Location Contig1946: 207192-208937
Sequence    

Annotation

kegg
ID rcu:RCOM_0222550
description ribosomal protein l7ae, putative
nr
ID XP_002524478.1
description ribosomal protein l7ae, putative [Ricinus communis]
swissprot
ID Q5XH16
description NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE=2 SV=1
trembl
ID B9SEQ9
description Ribosomal protein l7ae, putative OS=Ricinus communis GN=RCOM_0222550 PE=4 SV=1
Gene Ontology
ID GO:0005730
description nhp2-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19405: 207215-208932 , PASA_asmbl_19406: 207223-208908
cDNA
(Sanger)
(ID:Location)		 025_C10.ab1: 207215-208932 , 037_B05.ab1: 207215-208932 , 037_E17.ab1: 207215-208932

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_210 0.0 - - ribosomal protein l7ae, putative [Ricinus communis]
2 Hb_003939_080 0.0661930124 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002868_010 0.0700225974 - - 60S ribosomal protein L30, putative [Ricinus communis]
4 Hb_000101_270 0.0872781359 - - pleckstrin homology domain-containing family protein [Populus trichocarpa]
5 Hb_046049_010 0.0879801395 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
6 Hb_000380_190 0.0908389176 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
7 Hb_002311_350 0.0911533431 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
8 Hb_001369_660 0.092336064 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
9 Hb_004440_050 0.0927262735 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
10 Hb_011805_080 0.0929716109 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
11 Hb_000007_100 0.0932491788 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
12 Hb_003376_320 0.093555185 - - 60S ribosomal protein L12A [Hevea brasiliensis]
13 Hb_064264_010 0.094477876 - - hypothetical protein [Zea mays]
14 Hb_000926_300 0.0950315536 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
15 Hb_007617_020 0.0950389632 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001818_020 0.0957893501 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
17 Hb_000012_220 0.0958492762 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000742_140 0.0965722197 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003528_060 0.0971959783 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
20 Hb_012573_070 0.0982442994 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001946_210 Hb_001946_210 Hb_003939_080 Hb_003939_080 Hb_001946_210--Hb_003939_080 Hb_002868_010 Hb_002868_010 Hb_001946_210--Hb_002868_010 Hb_000101_270 Hb_000101_270 Hb_001946_210--Hb_000101_270 Hb_046049_010 Hb_046049_010 Hb_001946_210--Hb_046049_010 Hb_000380_190 Hb_000380_190 Hb_001946_210--Hb_000380_190 Hb_002311_350 Hb_002311_350 Hb_001946_210--Hb_002311_350 Hb_003939_080--Hb_002868_010 Hb_001512_070 Hb_001512_070 Hb_003939_080--Hb_001512_070 Hb_011360_140 Hb_011360_140 Hb_003939_080--Hb_011360_140 Hb_002007_060 Hb_002007_060 Hb_003939_080--Hb_002007_060 Hb_001828_090 Hb_001828_090 Hb_003939_080--Hb_001828_090 Hb_002868_010--Hb_002007_060 Hb_000000_160 Hb_000000_160 Hb_002868_010--Hb_000000_160 Hb_002868_010--Hb_011360_140 Hb_002868_010--Hb_001512_070 Hb_000101_270--Hb_003939_080 Hb_000101_270--Hb_002868_010 Hb_064264_010 Hb_064264_010 Hb_000101_270--Hb_064264_010 Hb_070986_010 Hb_070986_010 Hb_000101_270--Hb_070986_010 Hb_000101_270--Hb_000000_160 Hb_000917_110 Hb_000917_110 Hb_046049_010--Hb_000917_110 Hb_046049_010--Hb_064264_010 Hb_004800_230 Hb_004800_230 Hb_046049_010--Hb_004800_230 Hb_046049_010--Hb_002868_010 Hb_002660_080 Hb_002660_080 Hb_046049_010--Hb_002660_080 Hb_000380_190--Hb_002311_350 Hb_001477_110 Hb_001477_110 Hb_000380_190--Hb_001477_110 Hb_000007_100 Hb_000007_100 Hb_000380_190--Hb_000007_100 Hb_000227_230 Hb_000227_230 Hb_000380_190--Hb_000227_230 Hb_000085_320 Hb_000085_320 Hb_000380_190--Hb_000085_320 Hb_023732_070 Hb_023732_070 Hb_000380_190--Hb_023732_070 Hb_002311_350--Hb_001477_110 Hb_004645_050 Hb_004645_050 Hb_002311_350--Hb_004645_050 Hb_000189_270 Hb_000189_270 Hb_002311_350--Hb_000189_270 Hb_005618_140 Hb_005618_140 Hb_002311_350--Hb_005618_140 Hb_001824_070 Hb_001824_070 Hb_002311_350--Hb_001824_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
174.095 107.424 73.5672 90.3044 167.97 226.844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
204.758 425.767 100.232 82.5215 39.961

CAGE analysis