Hb_001946_220

Information

Type -
Description -
Location Contig1946: 209730-215860
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17120g
description POPTRDRAFT_829510; signal peptidase family protein
nr
ID XP_012078770.1
description PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
swissprot
ID Q5RC30
description Signal peptidase complex catalytic subunit SEC11C OS=Pongo abelii GN=SEC11C PE=2 SV=3
trembl
ID A0A067KJE7
description Signal peptidase I OS=Jatropha curcas GN=JCGZ_13315 PE=4 SV=1
Gene Ontology
ID GO:0016021
description signal peptidase complex catalytic subunit sec11a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19407: 213243-215950
cDNA
(Sanger)
(ID:Location)		 037_E17r.ab1: 207215-208781

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_220 0.0 - - PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
2 Hb_000120_720 0.136241564 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
3 Hb_000742_010 0.1370670751 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_002913_010 0.1375806166 - - PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]
5 Hb_000320_300 0.1386346369 - - prephenate dehydratase, putative [Ricinus communis]
6 Hb_007919_020 0.1432067609 - - electron transporter, putative [Ricinus communis]
7 Hb_001205_080 0.1546174856 - - Protein FAM96B, putative [Ricinus communis]
8 Hb_002235_050 0.1605448242 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
9 Hb_011282_050 0.1659146832 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
10 Hb_027746_020 0.1676085185 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Jatropha curcas]
11 Hb_007545_120 0.1710680318 - - NADH:cytochrome b5 reductase [Vernicia fordii]
12 Hb_083940_010 0.1727414353 - - Zeamatin precursor, putative [Ricinus communis]
13 Hb_000368_030 0.1733826471 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
14 Hb_000678_010 0.1755261063 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
15 Hb_177321_040 0.1761953803 - - hypothetical protein JCGZ_06328 [Jatropha curcas]
16 Hb_168893_020 0.1770716226 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
17 Hb_000174_260 0.1772314313 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
18 Hb_004005_020 0.1781321084 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_000465_150 0.1786338636 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
20 Hb_007185_040 0.1796691753 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]

Gene co-expression network

sample Hb_001946_220 Hb_001946_220 Hb_000120_720 Hb_000120_720 Hb_001946_220--Hb_000120_720 Hb_000742_010 Hb_000742_010 Hb_001946_220--Hb_000742_010 Hb_002913_010 Hb_002913_010 Hb_001946_220--Hb_002913_010 Hb_000320_300 Hb_000320_300 Hb_001946_220--Hb_000320_300 Hb_007919_020 Hb_007919_020 Hb_001946_220--Hb_007919_020 Hb_001205_080 Hb_001205_080 Hb_001946_220--Hb_001205_080 Hb_000120_720--Hb_000320_300 Hb_172112_020 Hb_172112_020 Hb_000120_720--Hb_172112_020 Hb_003266_100 Hb_003266_100 Hb_000120_720--Hb_003266_100 Hb_007185_040 Hb_007185_040 Hb_000120_720--Hb_007185_040 Hb_001369_300 Hb_001369_300 Hb_000120_720--Hb_001369_300 Hb_000076_210 Hb_000076_210 Hb_000742_010--Hb_000076_210 Hb_000174_260 Hb_000174_260 Hb_000742_010--Hb_000174_260 Hb_001633_090 Hb_001633_090 Hb_000742_010--Hb_001633_090 Hb_000913_030 Hb_000913_030 Hb_000742_010--Hb_000913_030 Hb_006824_010 Hb_006824_010 Hb_000742_010--Hb_006824_010 Hb_005754_040 Hb_005754_040 Hb_000742_010--Hb_005754_040 Hb_000678_010 Hb_000678_010 Hb_002913_010--Hb_000678_010 Hb_000229_050 Hb_000229_050 Hb_002913_010--Hb_000229_050 Hb_002235_050 Hb_002235_050 Hb_002913_010--Hb_002235_050 Hb_000296_010 Hb_000296_010 Hb_002913_010--Hb_000296_010 Hb_002913_010--Hb_000742_010 Hb_133004_010 Hb_133004_010 Hb_002913_010--Hb_133004_010 Hb_001699_200 Hb_001699_200 Hb_000320_300--Hb_001699_200 Hb_000614_170 Hb_000614_170 Hb_000320_300--Hb_000614_170 Hb_004005_020 Hb_004005_020 Hb_000320_300--Hb_004005_020 Hb_000320_300--Hb_003266_100 Hb_000270_180 Hb_000270_180 Hb_007919_020--Hb_000270_180 Hb_000368_030 Hb_000368_030 Hb_007919_020--Hb_000368_030 Hb_007919_020--Hb_001205_080 Hb_007919_020--Hb_000742_010 Hb_000648_050 Hb_000648_050 Hb_007919_020--Hb_000648_050 Hb_002686_200 Hb_002686_200 Hb_001205_080--Hb_002686_200 Hb_001205_080--Hb_006824_010 Hb_002693_030 Hb_002693_030 Hb_001205_080--Hb_002693_030 Hb_001205_080--Hb_000742_010 Hb_065968_010 Hb_065968_010 Hb_001205_080--Hb_065968_010 Hb_000703_330 Hb_000703_330 Hb_001205_080--Hb_000703_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.17741 4.55465 25.1536 13.2666 2.49825 2.18344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4622 7.86238 8.88491 26.9529 5.6466

CAGE analysis