Hb_001946_240

Information

Type -
Description -
Location Contig1946: 220747-221844
Sequence    

Annotation

kegg
ID rcu:RCOM_0222530
description Protein HLJ1, putative
nr
ID XP_012078767.1
description PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
swissprot
ID Q9FH28
description Chaperone protein dnaJ 49 OS=Arabidopsis thaliana GN=ATJ49 PE=2 SV=2
trembl
ID A0A067KKP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13314 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19409: 220695-222024 , PASA_asmbl_19410: 219891-221782 , PASA_asmbl_19411: 221826-222166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_240 0.0 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
2 Hb_000116_460 0.0724014398 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
3 Hb_000504_160 0.0794685713 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
4 Hb_003540_160 0.0836078012 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
5 Hb_001473_080 0.0846976106 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
6 Hb_002675_040 0.0857862638 - - ran-binding protein, putative [Ricinus communis]
7 Hb_000953_030 0.0904160199 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
8 Hb_000317_150 0.0928652094 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
9 Hb_001474_030 0.0976050763 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
10 Hb_000281_010 0.0996871997 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
11 Hb_007951_100 0.1011560705 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_007943_120 0.1021188784 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
13 Hb_017895_020 0.1027130356 - - Vacuolar protein sorting protein, putative [Ricinus communis]
14 Hb_001946_300 0.1047181035 - - PREDICTED: F-box protein At-B [Jatropha curcas]
15 Hb_002301_270 0.1053751698 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
16 Hb_000313_340 0.1062451505 - - DNA repair protein xp-E, putative [Ricinus communis]
17 Hb_001900_120 0.1068539607 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
18 Hb_033594_020 0.1071037185 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
19 Hb_000640_020 0.1085595538 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
20 Hb_010883_080 0.1093475405 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001946_240 Hb_001946_240 Hb_000116_460 Hb_000116_460 Hb_001946_240--Hb_000116_460 Hb_000504_160 Hb_000504_160 Hb_001946_240--Hb_000504_160 Hb_003540_160 Hb_003540_160 Hb_001946_240--Hb_003540_160 Hb_001473_080 Hb_001473_080 Hb_001946_240--Hb_001473_080 Hb_002675_040 Hb_002675_040 Hb_001946_240--Hb_002675_040 Hb_000953_030 Hb_000953_030 Hb_001946_240--Hb_000953_030 Hb_000281_010 Hb_000281_010 Hb_000116_460--Hb_000281_010 Hb_004920_060 Hb_004920_060 Hb_000116_460--Hb_004920_060 Hb_000116_460--Hb_001473_080 Hb_010883_080 Hb_010883_080 Hb_000116_460--Hb_010883_080 Hb_000116_460--Hb_002675_040 Hb_002659_060 Hb_002659_060 Hb_000504_160--Hb_002659_060 Hb_001396_290 Hb_001396_290 Hb_000504_160--Hb_001396_290 Hb_000343_210 Hb_000343_210 Hb_000504_160--Hb_000343_210 Hb_001946_300 Hb_001946_300 Hb_000504_160--Hb_001946_300 Hb_000640_020 Hb_000640_020 Hb_000504_160--Hb_000640_020 Hb_006829_090 Hb_006829_090 Hb_000504_160--Hb_006829_090 Hb_000317_150 Hb_000317_150 Hb_003540_160--Hb_000317_150 Hb_001117_190 Hb_001117_190 Hb_003540_160--Hb_001117_190 Hb_005539_190 Hb_005539_190 Hb_003540_160--Hb_005539_190 Hb_140049_020 Hb_140049_020 Hb_003540_160--Hb_140049_020 Hb_000753_100 Hb_000753_100 Hb_003540_160--Hb_000753_100 Hb_007943_120 Hb_007943_120 Hb_003540_160--Hb_007943_120 Hb_001922_130 Hb_001922_130 Hb_001473_080--Hb_001922_130 Hb_003125_060 Hb_003125_060 Hb_001473_080--Hb_003125_060 Hb_000120_570 Hb_000120_570 Hb_001473_080--Hb_000120_570 Hb_001473_080--Hb_010883_080 Hb_001473_080--Hb_002675_040 Hb_033594_020 Hb_033594_020 Hb_002675_040--Hb_033594_020 Hb_017895_020 Hb_017895_020 Hb_002675_040--Hb_017895_020 Hb_002675_040--Hb_000343_210 Hb_001900_120 Hb_001900_120 Hb_002675_040--Hb_001900_120 Hb_000329_130 Hb_000329_130 Hb_002675_040--Hb_000329_130 Hb_008725_130 Hb_008725_130 Hb_002675_040--Hb_008725_130 Hb_000152_340 Hb_000152_340 Hb_000953_030--Hb_000152_340 Hb_000953_030--Hb_001946_300 Hb_000953_030--Hb_005539_190 Hb_004635_050 Hb_004635_050 Hb_000953_030--Hb_004635_050 Hb_102129_070 Hb_102129_070 Hb_000953_030--Hb_102129_070 Hb_002326_020 Hb_002326_020 Hb_000953_030--Hb_002326_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
132.435 82.1235 49.0201 34.4558 134.787 80.0765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.7309 23.8722 22.7548 24.7763 26.3276

CAGE analysis