Hb_001946_260

Information

Type -
Description -
Location Contig1946: 233713-238369
Sequence    

Annotation

kegg
ID rcu:RCOM_0222510
description ribosome biogenesis regulatory protein, putative
nr
ID XP_012078765.1
description PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
swissprot
ID Q9SH88
description Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana GN=At2g37990 PE=2 SV=2
trembl
ID A0A067K8F6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13312 PE=4 SV=1
Gene Ontology
ID GO:0005730
description ribosome biogenesis regulatory protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19412: 233776-238252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_260 0.0 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
2 Hb_011537_040 0.1011737853 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
3 Hb_025557_020 0.102536142 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
4 Hb_164010_020 0.1037527893 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
5 Hb_000282_150 0.1061088313 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
6 Hb_000879_140 0.1110057652 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
7 Hb_000002_330 0.1142281004 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
8 Hb_018663_020 0.1151797955 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
9 Hb_000258_410 0.1153161907 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
10 Hb_000236_320 0.1159616083 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
11 Hb_001009_050 0.1176592146 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
12 Hb_001341_030 0.1181443904 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
13 Hb_005271_070 0.1226229906 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
14 Hb_000318_140 0.1243396819 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
15 Hb_004310_060 0.1244379538 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_009118_010 0.1248777859 - - methionine aminopeptidase, putative [Ricinus communis]
17 Hb_000529_080 0.1249950599 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
18 Hb_004374_010 0.1253340663 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
19 Hb_000343_230 0.126281016 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
20 Hb_150069_020 0.1267376382 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001946_260 Hb_001946_260 Hb_011537_040 Hb_011537_040 Hb_001946_260--Hb_011537_040 Hb_025557_020 Hb_025557_020 Hb_001946_260--Hb_025557_020 Hb_164010_020 Hb_164010_020 Hb_001946_260--Hb_164010_020 Hb_000282_150 Hb_000282_150 Hb_001946_260--Hb_000282_150 Hb_000879_140 Hb_000879_140 Hb_001946_260--Hb_000879_140 Hb_000002_330 Hb_000002_330 Hb_001946_260--Hb_000002_330 Hb_005271_070 Hb_005271_070 Hb_011537_040--Hb_005271_070 Hb_000258_410 Hb_000258_410 Hb_011537_040--Hb_000258_410 Hb_001956_120 Hb_001956_120 Hb_011537_040--Hb_001956_120 Hb_004374_010 Hb_004374_010 Hb_011537_040--Hb_004374_010 Hb_011537_040--Hb_000282_150 Hb_002851_060 Hb_002851_060 Hb_011537_040--Hb_002851_060 Hb_000318_140 Hb_000318_140 Hb_025557_020--Hb_000318_140 Hb_025557_020--Hb_164010_020 Hb_000631_150 Hb_000631_150 Hb_025557_020--Hb_000631_150 Hb_018663_020 Hb_018663_020 Hb_025557_020--Hb_018663_020 Hb_000116_170 Hb_000116_170 Hb_025557_020--Hb_000116_170 Hb_001226_180 Hb_001226_180 Hb_025557_020--Hb_001226_180 Hb_164010_020--Hb_000318_140 Hb_164010_020--Hb_005271_070 Hb_009615_110 Hb_009615_110 Hb_164010_020--Hb_009615_110 Hb_009913_050 Hb_009913_050 Hb_164010_020--Hb_009913_050 Hb_164010_020--Hb_000258_410 Hb_001140_080 Hb_001140_080 Hb_000282_150--Hb_001140_080 Hb_000500_290 Hb_000500_290 Hb_000282_150--Hb_000500_290 Hb_000270_450 Hb_000270_450 Hb_000282_150--Hb_000270_450 Hb_012807_120 Hb_012807_120 Hb_000282_150--Hb_012807_120 Hb_004232_010 Hb_004232_010 Hb_000282_150--Hb_004232_010 Hb_000300_280 Hb_000300_280 Hb_000879_140--Hb_000300_280 Hb_004310_060 Hb_004310_060 Hb_000879_140--Hb_004310_060 Hb_000803_300 Hb_000803_300 Hb_000879_140--Hb_000803_300 Hb_000645_150 Hb_000645_150 Hb_000879_140--Hb_000645_150 Hb_000236_320 Hb_000236_320 Hb_000879_140--Hb_000236_320 Hb_007590_080 Hb_007590_080 Hb_000879_140--Hb_007590_080 Hb_000002_330--Hb_000236_320 Hb_006816_500 Hb_006816_500 Hb_000002_330--Hb_006816_500 Hb_000322_050 Hb_000322_050 Hb_000002_330--Hb_000322_050 Hb_003453_020 Hb_003453_020 Hb_000002_330--Hb_003453_020 Hb_004096_170 Hb_004096_170 Hb_000002_330--Hb_004096_170 Hb_000002_330--Hb_000645_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
149.777 28.3755 19.1703 16.138 123.88 107.303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
111.392 42.6187 23.7275 60.3181 13.9996

CAGE analysis