Hb_001946_280

Information

Type -
Description -
Location Contig1946: 242938-244944
Sequence    

Annotation

kegg
ID rcu:RCOM_0222390
description hypothetical protein
nr
ID XP_002524472.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22969
description Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1
trembl
ID B9SEQ3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0222390 PE=4 SV=1
Gene Ontology
ID GO:0003676
description alba dna rna-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19413: 242971-244695 , PASA_asmbl_19414: 242971-243798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_280 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011639_050 0.1109896028 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000369_060 0.124682864 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
4 Hb_002740_130 0.1278053286 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
5 Hb_008453_150 0.1309941273 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
6 Hb_003060_070 0.1320487008 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_185467_010 0.1323233914 - - -
8 Hb_001936_050 0.1347933001 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
9 Hb_001981_070 0.1354471365 - - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]
10 Hb_057183_040 0.1358641051 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
11 Hb_011496_010 0.1398448701 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
12 Hb_185467_020 0.1416703318 - - Cucumisin precursor, putative [Ricinus communis]
13 Hb_007786_010 0.1441704443 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
14 Hb_003106_010 0.1447522476 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
15 Hb_009404_010 0.1471442168 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
16 Hb_002874_070 0.1472694784 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
17 Hb_001140_200 0.1476198139 - - PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
18 Hb_000490_030 0.151288111 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
19 Hb_002631_050 0.1517503164 - - membrane associated ring finger 1,8, putative [Ricinus communis]
20 Hb_004993_010 0.1532295842 - - PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001946_280 Hb_001946_280 Hb_011639_050 Hb_011639_050 Hb_001946_280--Hb_011639_050 Hb_000369_060 Hb_000369_060 Hb_001946_280--Hb_000369_060 Hb_002740_130 Hb_002740_130 Hb_001946_280--Hb_002740_130 Hb_008453_150 Hb_008453_150 Hb_001946_280--Hb_008453_150 Hb_003060_070 Hb_003060_070 Hb_001946_280--Hb_003060_070 Hb_185467_010 Hb_185467_010 Hb_001946_280--Hb_185467_010 Hb_011639_050--Hb_000369_060 Hb_002874_070 Hb_002874_070 Hb_011639_050--Hb_002874_070 Hb_000497_140 Hb_000497_140 Hb_011639_050--Hb_000497_140 Hb_004440_100 Hb_004440_100 Hb_011639_050--Hb_004440_100 Hb_011639_050--Hb_185467_010 Hb_006091_030 Hb_006091_030 Hb_000369_060--Hb_006091_030 Hb_000369_060--Hb_004440_100 Hb_002400_270 Hb_002400_270 Hb_000369_060--Hb_002400_270 Hb_000369_060--Hb_002874_070 Hb_001846_060 Hb_001846_060 Hb_000369_060--Hb_001846_060 Hb_001673_120 Hb_001673_120 Hb_002740_130--Hb_001673_120 Hb_000120_050 Hb_000120_050 Hb_002740_130--Hb_000120_050 Hb_002740_130--Hb_000369_060 Hb_001140_200 Hb_001140_200 Hb_002740_130--Hb_001140_200 Hb_000363_170 Hb_000363_170 Hb_002740_130--Hb_000363_170 Hb_000258_430 Hb_000258_430 Hb_002740_130--Hb_000258_430 Hb_185467_020 Hb_185467_020 Hb_008453_150--Hb_185467_020 Hb_002631_050 Hb_002631_050 Hb_008453_150--Hb_002631_050 Hb_000084_310 Hb_000084_310 Hb_008453_150--Hb_000084_310 Hb_001981_070 Hb_001981_070 Hb_008453_150--Hb_001981_070 Hb_014568_030 Hb_014568_030 Hb_008453_150--Hb_014568_030 Hb_057183_040 Hb_057183_040 Hb_008453_150--Hb_057183_040 Hb_000270_420 Hb_000270_420 Hb_003060_070--Hb_000270_420 Hb_003060_070--Hb_057183_040 Hb_000025_480 Hb_000025_480 Hb_003060_070--Hb_000025_480 Hb_000571_070 Hb_000571_070 Hb_003060_070--Hb_000571_070 Hb_000789_190 Hb_000789_190 Hb_003060_070--Hb_000789_190 Hb_002067_160 Hb_002067_160 Hb_003060_070--Hb_002067_160 Hb_024714_020 Hb_024714_020 Hb_185467_010--Hb_024714_020 Hb_000721_010 Hb_000721_010 Hb_185467_010--Hb_000721_010 Hb_004993_010 Hb_004993_010 Hb_185467_010--Hb_004993_010 Hb_000046_300 Hb_000046_300 Hb_185467_010--Hb_000046_300 Hb_001936_050 Hb_001936_050 Hb_185467_010--Hb_001936_050 Hb_185467_010--Hb_002874_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
184.856 15.8762 17.9097 11.3964 88.5491 152.889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.5514 47.2868 108.793 31.6223 10.597

CAGE analysis