Hb_001946_290

Information

Type -
Description -
Location Contig1946: 249161-257763
Sequence    

Annotation

kegg
ID rcu:RCOM_0364160
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012081859.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LIH9
description DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis thaliana GN=RH51 PE=2 SV=1
trembl
ID A0A067KB69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19228 PE=3 SV=1
Gene Ontology
ID GO:0003723
description dead-box atp-dependent rna helicase 51-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19416: 249197-257731 , PASA_asmbl_19418: 252545-252641
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_290 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
2 Hb_000041_110 0.0758205566 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
3 Hb_001235_150 0.0839290598 - - PREDICTED: chaperone protein dnaJ 13 isoform X1 [Jatropha curcas]
4 Hb_004254_090 0.0849922521 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
5 Hb_002631_030 0.086029161 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001541_290 0.0872960416 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
7 Hb_002518_260 0.0883716181 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
8 Hb_001257_010 0.0905768957 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
9 Hb_009486_140 0.0912042631 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
10 Hb_002007_080 0.0948224798 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
11 Hb_000250_060 0.0957089792 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
12 Hb_002006_030 0.0966320417 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER [Jatropha curcas]
13 Hb_000297_010 0.0991086665 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
14 Hb_000684_470 0.0994779815 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
15 Hb_004724_150 0.1010031436 - - expressed protein, putative [Ricinus communis]
16 Hb_000327_180 0.1010924482 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
17 Hb_003465_030 0.1011917853 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000146_070 0.1028523783 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
19 Hb_003494_230 0.1029320433 - - starch synthase isoform II [Manihot esculenta]
20 Hb_006615_020 0.1038971673 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]

Gene co-expression network

sample Hb_001946_290 Hb_001946_290 Hb_000041_110 Hb_000041_110 Hb_001946_290--Hb_000041_110 Hb_001235_150 Hb_001235_150 Hb_001946_290--Hb_001235_150 Hb_004254_090 Hb_004254_090 Hb_001946_290--Hb_004254_090 Hb_002631_030 Hb_002631_030 Hb_001946_290--Hb_002631_030 Hb_001541_290 Hb_001541_290 Hb_001946_290--Hb_001541_290 Hb_002518_260 Hb_002518_260 Hb_001946_290--Hb_002518_260 Hb_000041_110--Hb_002518_260 Hb_009486_140 Hb_009486_140 Hb_000041_110--Hb_009486_140 Hb_000258_160 Hb_000258_160 Hb_000041_110--Hb_000258_160 Hb_000297_010 Hb_000297_010 Hb_000041_110--Hb_000297_010 Hb_000792_010 Hb_000792_010 Hb_000041_110--Hb_000792_010 Hb_000329_710 Hb_000329_710 Hb_000041_110--Hb_000329_710 Hb_000006_040 Hb_000006_040 Hb_001235_150--Hb_000006_040 Hb_033642_090 Hb_033642_090 Hb_001235_150--Hb_033642_090 Hb_001235_150--Hb_004254_090 Hb_001357_250 Hb_001357_250 Hb_001235_150--Hb_001357_250 Hb_000165_040 Hb_000165_040 Hb_001235_150--Hb_000165_040 Hb_000696_230 Hb_000696_230 Hb_001235_150--Hb_000696_230 Hb_000138_100 Hb_000138_100 Hb_004254_090--Hb_000138_100 Hb_002592_060 Hb_002592_060 Hb_004254_090--Hb_002592_060 Hb_123915_040 Hb_123915_040 Hb_004254_090--Hb_123915_040 Hb_007479_040 Hb_007479_040 Hb_004254_090--Hb_007479_040 Hb_004846_220 Hb_004846_220 Hb_004254_090--Hb_004846_220 Hb_004254_090--Hb_002518_260 Hb_000329_760 Hb_000329_760 Hb_002631_030--Hb_000329_760 Hb_000137_090 Hb_000137_090 Hb_002631_030--Hb_000137_090 Hb_000460_030 Hb_000460_030 Hb_002631_030--Hb_000460_030 Hb_002006_030 Hb_002006_030 Hb_002631_030--Hb_002006_030 Hb_031340_050 Hb_031340_050 Hb_002631_030--Hb_031340_050 Hb_003494_230 Hb_003494_230 Hb_001541_290--Hb_003494_230 Hb_002053_150 Hb_002053_150 Hb_001541_290--Hb_002053_150 Hb_002675_130 Hb_002675_130 Hb_001541_290--Hb_002675_130 Hb_003228_110 Hb_003228_110 Hb_001541_290--Hb_003228_110 Hb_001998_240 Hb_001998_240 Hb_001541_290--Hb_001998_240 Hb_002518_260--Hb_000792_010 Hb_000028_480 Hb_000028_480 Hb_002518_260--Hb_000028_480 Hb_002518_260--Hb_009486_140 Hb_011386_010 Hb_011386_010 Hb_002518_260--Hb_011386_010 Hb_002518_260--Hb_000329_710
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4445 18.6915 15.8564 10.2818 17.5595 12.2288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.5225 19.9158 26.1801 24.7064 18.9294

CAGE analysis