Hb_001946_300

Information

Type -
Description -
Location Contig1946: 259117-261556
Sequence    

Annotation

kegg
ID pop:POPTR_0011s17260g
description F-box family protein
nr
ID XP_012081867.1
description PREDICTED: F-box protein At-B [Jatropha curcas]
swissprot
ID Q9ZWC6
description F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1
trembl
ID A0A067K057
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19230 PE=4 SV=1
Gene Ontology
ID GO:0005737
description f-box protein at-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19419: 259139-261902 , PASA_asmbl_19420: 259139-261902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_300 0.0 - - PREDICTED: F-box protein At-B [Jatropha curcas]
2 Hb_000363_130 0.0502760863 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
3 Hb_000313_340 0.0590816045 - - DNA repair protein xp-E, putative [Ricinus communis]
4 Hb_140049_020 0.069504942 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
5 Hb_147737_010 0.0701454245 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
6 Hb_032202_240 0.0720298816 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
7 Hb_000504_160 0.075013453 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
8 Hb_000098_130 0.075146242 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
9 Hb_000813_100 0.0752156367 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
10 Hb_000343_210 0.0761912935 - - ran-binding protein, putative [Ricinus communis]
11 Hb_001616_050 0.076220908 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
12 Hb_004899_070 0.0767415123 - - PREDICTED: RRP12-like protein [Jatropha curcas]
13 Hb_017075_030 0.0777537139 - - helicase, putative [Ricinus communis]
14 Hb_000953_030 0.078653503 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
15 Hb_000261_290 0.0809062143 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
16 Hb_007229_040 0.0840457911 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
17 Hb_007403_050 0.0841568853 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
18 Hb_015026_050 0.0848074871 - - XPA-binding protein, putative [Ricinus communis]
19 Hb_000320_380 0.084882322 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
20 Hb_002477_150 0.0856017443 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001946_300 Hb_001946_300 Hb_000363_130 Hb_000363_130 Hb_001946_300--Hb_000363_130 Hb_000313_340 Hb_000313_340 Hb_001946_300--Hb_000313_340 Hb_140049_020 Hb_140049_020 Hb_001946_300--Hb_140049_020 Hb_147737_010 Hb_147737_010 Hb_001946_300--Hb_147737_010 Hb_032202_240 Hb_032202_240 Hb_001946_300--Hb_032202_240 Hb_000504_160 Hb_000504_160 Hb_001946_300--Hb_000504_160 Hb_000363_130--Hb_140049_020 Hb_000363_130--Hb_000313_340 Hb_000865_080 Hb_000865_080 Hb_000363_130--Hb_000865_080 Hb_030565_090 Hb_030565_090 Hb_000363_130--Hb_030565_090 Hb_000136_090 Hb_000136_090 Hb_000363_130--Hb_000136_090 Hb_000313_340--Hb_140049_020 Hb_007885_070 Hb_007885_070 Hb_000313_340--Hb_007885_070 Hb_004899_070 Hb_004899_070 Hb_000313_340--Hb_004899_070 Hb_000261_290 Hb_000261_290 Hb_000313_340--Hb_000261_290 Hb_019153_020 Hb_019153_020 Hb_140049_020--Hb_019153_020 Hb_005539_190 Hb_005539_190 Hb_140049_020--Hb_005539_190 Hb_000329_130 Hb_000329_130 Hb_140049_020--Hb_000329_130 Hb_007229_040 Hb_007229_040 Hb_140049_020--Hb_007229_040 Hb_147737_010--Hb_000329_130 Hb_015026_050 Hb_015026_050 Hb_147737_010--Hb_015026_050 Hb_000343_210 Hb_000343_210 Hb_147737_010--Hb_000343_210 Hb_000567_010 Hb_000567_010 Hb_147737_010--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_147737_010--Hb_003124_130 Hb_000531_090 Hb_000531_090 Hb_147737_010--Hb_000531_090 Hb_002977_010 Hb_002977_010 Hb_032202_240--Hb_002977_010 Hb_001616_050 Hb_001616_050 Hb_032202_240--Hb_001616_050 Hb_000331_160 Hb_000331_160 Hb_032202_240--Hb_000331_160 Hb_017075_030 Hb_017075_030 Hb_032202_240--Hb_017075_030 Hb_025477_060 Hb_025477_060 Hb_032202_240--Hb_025477_060 Hb_002659_060 Hb_002659_060 Hb_000504_160--Hb_002659_060 Hb_001396_290 Hb_001396_290 Hb_000504_160--Hb_001396_290 Hb_000504_160--Hb_000343_210 Hb_000640_020 Hb_000640_020 Hb_000504_160--Hb_000640_020 Hb_006829_090 Hb_006829_090 Hb_000504_160--Hb_006829_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.158 21.0649 7.65891 6.8194 22.4739 22.5411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.01621 6.41399 7.54699 7.26657 4.88126

CAGE analysis