Hb_001946_320

Information

Type -
Description -
Location Contig1946: 274256-277623
Sequence    

Annotation

kegg
ID rcu:RCOM_0221960
description Protein AFR, putative
nr
ID XP_012078756.1
description PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
swissprot
ID Q93W93
description F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1
trembl
ID A0A067K8F2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13307 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19423: 274285-278020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_320 0.0 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
2 Hb_002307_090 0.0610275912 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
3 Hb_001232_130 0.0744696485 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
4 Hb_010589_040 0.0823366996 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000861_040 0.0970186459 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
6 Hb_015934_020 0.1115809224 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
7 Hb_007229_060 0.1163900102 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
8 Hb_005000_290 0.1191903789 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
9 Hb_012522_030 0.1193428071 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_003408_030 0.1211075946 - - PREDICTED: protein YIF1B [Jatropha curcas]
11 Hb_026988_020 0.1216249987 - - outward rectifying K+ channel [Hevea brasiliensis]
12 Hb_011457_170 0.1216493462 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
13 Hb_002291_030 0.1226931633 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
14 Hb_000749_250 0.1247486516 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
15 Hb_004800_160 0.1251563544 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
16 Hb_003943_030 0.1275607418 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
17 Hb_001437_240 0.1286608336 - - -
18 Hb_005653_120 0.1302907224 - - PREDICTED: fatty acyl-CoA reductase 3-like isoform X2 [Prunus mume]
19 Hb_002936_050 0.1315753018 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
20 Hb_001677_110 0.1327398423 - - Protein YIPF1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001946_320 Hb_001946_320 Hb_002307_090 Hb_002307_090 Hb_001946_320--Hb_002307_090 Hb_001232_130 Hb_001232_130 Hb_001946_320--Hb_001232_130 Hb_010589_040 Hb_010589_040 Hb_001946_320--Hb_010589_040 Hb_000861_040 Hb_000861_040 Hb_001946_320--Hb_000861_040 Hb_015934_020 Hb_015934_020 Hb_001946_320--Hb_015934_020 Hb_007229_060 Hb_007229_060 Hb_001946_320--Hb_007229_060 Hb_002307_090--Hb_001232_130 Hb_002307_090--Hb_007229_060 Hb_002307_090--Hb_000861_040 Hb_005000_290 Hb_005000_290 Hb_002307_090--Hb_005000_290 Hb_002291_030 Hb_002291_030 Hb_002307_090--Hb_002291_030 Hb_000749_250 Hb_000749_250 Hb_001232_130--Hb_000749_250 Hb_003943_030 Hb_003943_030 Hb_001232_130--Hb_003943_030 Hb_001232_130--Hb_010589_040 Hb_002936_050 Hb_002936_050 Hb_001232_130--Hb_002936_050 Hb_010589_040--Hb_000861_040 Hb_010589_040--Hb_015934_020 Hb_012522_030 Hb_012522_030 Hb_010589_040--Hb_012522_030 Hb_010589_040--Hb_002307_090 Hb_010589_040--Hb_002291_030 Hb_003408_030 Hb_003408_030 Hb_000861_040--Hb_003408_030 Hb_002326_030 Hb_002326_030 Hb_000861_040--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_000861_040--Hb_002527_070 Hb_000861_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_000861_040--Hb_026988_020 Hb_000983_100 Hb_000983_100 Hb_000861_040--Hb_000983_100 Hb_007810_030 Hb_007810_030 Hb_015934_020--Hb_007810_030 Hb_015934_020--Hb_005000_290 Hb_002387_060 Hb_002387_060 Hb_015934_020--Hb_002387_060 Hb_000032_220 Hb_000032_220 Hb_015934_020--Hb_000032_220 Hb_000078_010 Hb_000078_010 Hb_015934_020--Hb_000078_010 Hb_002685_090 Hb_002685_090 Hb_015934_020--Hb_002685_090 Hb_007229_060--Hb_000983_100 Hb_007229_060--Hb_002326_030 Hb_002794_030 Hb_002794_030 Hb_007229_060--Hb_002794_030 Hb_001981_090 Hb_001981_090 Hb_007229_060--Hb_001981_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.2133 6.77933 4.335 10.539 62.6278 43.0169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.9096 104.287 149.445 10.6926 11.3723

CAGE analysis