Hb_001946_330

Information

Type -
Description -
Location Contig1946: 282463-285687
Sequence    

Annotation

kegg
ID rcu:RCOM_0221850
description hypothetical protein
nr
ID XP_012078754.1
description PREDICTED: transmembrane protein 128 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SEP9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0221850 PE=4 SV=1
Gene Ontology
ID GO:0006661
description transmembrane protein 128

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19424: 282866-285538 , PASA_asmbl_19425: 285638-285933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_330 0.0 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
2 Hb_000059_050 0.0947824673 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
3 Hb_000853_190 0.096281104 - - mitochondrial carrier protein, putative [Ricinus communis]
4 Hb_003992_170 0.101934308 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
5 Hb_001545_100 0.1069820736 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
6 Hb_000436_130 0.1114214089 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
7 Hb_009339_030 0.1128090365 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
8 Hb_034013_020 0.1145850544 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
9 Hb_000617_200 0.1158423677 - - f-actin capping protein alpha, putative [Ricinus communis]
10 Hb_003540_030 0.1161756395 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
11 Hb_002503_020 0.1163127166 - - Phosphatase 2C family protein, putative [Theobroma cacao]
12 Hb_005162_070 0.1167816497 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000140_050 0.1168384632 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
14 Hb_019113_020 0.1187303293 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
15 Hb_001014_230 0.1188896533 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
16 Hb_004079_030 0.1205984381 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
17 Hb_000260_570 0.1231744476 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_002027_040 0.1235878646 - - synapse-associated protein, putative [Ricinus communis]
19 Hb_013607_040 0.12442908 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
20 Hb_007416_060 0.1263154507 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]

Gene co-expression network

sample Hb_001946_330 Hb_001946_330 Hb_000059_050 Hb_000059_050 Hb_001946_330--Hb_000059_050 Hb_000853_190 Hb_000853_190 Hb_001946_330--Hb_000853_190 Hb_003992_170 Hb_003992_170 Hb_001946_330--Hb_003992_170 Hb_001545_100 Hb_001545_100 Hb_001946_330--Hb_001545_100 Hb_000436_130 Hb_000436_130 Hb_001946_330--Hb_000436_130 Hb_009339_030 Hb_009339_030 Hb_001946_330--Hb_009339_030 Hb_004079_030 Hb_004079_030 Hb_000059_050--Hb_004079_030 Hb_000059_050--Hb_003992_170 Hb_119600_070 Hb_119600_070 Hb_000059_050--Hb_119600_070 Hb_000066_080 Hb_000066_080 Hb_000059_050--Hb_000066_080 Hb_000047_030 Hb_000047_030 Hb_000059_050--Hb_000047_030 Hb_000853_190--Hb_000436_130 Hb_011512_040 Hb_011512_040 Hb_000853_190--Hb_011512_040 Hb_000962_040 Hb_000962_040 Hb_000853_190--Hb_000962_040 Hb_000614_220 Hb_000614_220 Hb_000853_190--Hb_000614_220 Hb_027654_060 Hb_027654_060 Hb_000853_190--Hb_027654_060 Hb_002871_190 Hb_002871_190 Hb_000853_190--Hb_002871_190 Hb_000749_270 Hb_000749_270 Hb_003992_170--Hb_000749_270 Hb_002284_310 Hb_002284_310 Hb_003992_170--Hb_002284_310 Hb_003992_170--Hb_004079_030 Hb_000836_040 Hb_000836_040 Hb_003992_170--Hb_000836_040 Hb_003540_030 Hb_003540_030 Hb_001545_100--Hb_003540_030 Hb_000140_050 Hb_000140_050 Hb_001545_100--Hb_000140_050 Hb_001279_340 Hb_001279_340 Hb_001545_100--Hb_001279_340 Hb_004225_080 Hb_004225_080 Hb_001545_100--Hb_004225_080 Hb_006831_120 Hb_006831_120 Hb_001545_100--Hb_006831_120 Hb_000436_130--Hb_009339_030 Hb_010883_050 Hb_010883_050 Hb_000436_130--Hb_010883_050 Hb_000733_180 Hb_000733_180 Hb_000436_130--Hb_000733_180 Hb_003697_040 Hb_003697_040 Hb_000436_130--Hb_003697_040 Hb_001013_030 Hb_001013_030 Hb_000436_130--Hb_001013_030 Hb_003053_020 Hb_003053_020 Hb_000436_130--Hb_003053_020 Hb_009339_030--Hb_001013_030 Hb_000288_030 Hb_000288_030 Hb_009339_030--Hb_000288_030 Hb_050514_010 Hb_050514_010 Hb_009339_030--Hb_050514_010 Hb_007416_060 Hb_007416_060 Hb_009339_030--Hb_007416_060 Hb_000827_050 Hb_000827_050 Hb_009339_030--Hb_000827_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.48451 1.22785 2.65383 3.23735 1.72545 2.98008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.82362 5.62959 9.86236 1.58853 5.23021

CAGE analysis