Hb_001946_340

Information

Type -
Description -
Location Contig1946: 288085-293327
Sequence    

Annotation

kegg
ID pop:POPTR_0015s06780g
description hypothetical protein
nr
ID XP_012078751.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
swissprot
ID F4K460
description Mediator of RNA polymerase II transcription subunit 17 OS=Arabidopsis thaliana GN=MED17 PE=1 SV=1
trembl
ID A0A067K814
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13306 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19427: 288334-289968 , PASA_asmbl_19428: 291886-293271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_340 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
2 Hb_003943_010 0.0587997867 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007123_030 0.0675269392 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
4 Hb_007747_040 0.0681773836 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
5 Hb_004935_030 0.0683249398 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
6 Hb_001767_140 0.0691871246 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
7 Hb_001377_160 0.0694516818 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
8 Hb_000170_150 0.070417263 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
9 Hb_000656_380 0.0720102 - - PREDICTED: exportin-T [Jatropha curcas]
10 Hb_013399_070 0.0720184671 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
11 Hb_000579_230 0.0720903268 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
12 Hb_007062_030 0.0721668349 - - hypothetical protein VITISV_039033 [Vitis vinifera]
13 Hb_000590_050 0.0737321172 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
14 Hb_000398_080 0.0750080625 - - tip120, putative [Ricinus communis]
15 Hb_003371_110 0.0754397977 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
16 Hb_183612_040 0.0758323706 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
17 Hb_012092_060 0.077014421 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
18 Hb_000170_090 0.0783103289 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
19 Hb_000264_030 0.0783171632 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
20 Hb_105328_020 0.0794764066 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]

Gene co-expression network

sample Hb_001946_340 Hb_001946_340 Hb_003943_010 Hb_003943_010 Hb_001946_340--Hb_003943_010 Hb_007123_030 Hb_007123_030 Hb_001946_340--Hb_007123_030 Hb_007747_040 Hb_007747_040 Hb_001946_340--Hb_007747_040 Hb_004935_030 Hb_004935_030 Hb_001946_340--Hb_004935_030 Hb_001767_140 Hb_001767_140 Hb_001946_340--Hb_001767_140 Hb_001377_160 Hb_001377_160 Hb_001946_340--Hb_001377_160 Hb_003943_010--Hb_001377_160 Hb_000227_220 Hb_000227_220 Hb_003943_010--Hb_000227_220 Hb_000398_080 Hb_000398_080 Hb_003943_010--Hb_000398_080 Hb_000879_040 Hb_000879_040 Hb_003943_010--Hb_000879_040 Hb_159558_010 Hb_159558_010 Hb_003943_010--Hb_159558_010 Hb_001343_040 Hb_001343_040 Hb_007123_030--Hb_001343_040 Hb_007123_030--Hb_001377_160 Hb_000130_410 Hb_000130_410 Hb_007123_030--Hb_000130_410 Hb_003498_120 Hb_003498_120 Hb_007123_030--Hb_003498_120 Hb_001235_140 Hb_001235_140 Hb_007123_030--Hb_001235_140 Hb_002732_040 Hb_002732_040 Hb_007747_040--Hb_002732_040 Hb_002205_250 Hb_002205_250 Hb_007747_040--Hb_002205_250 Hb_020378_030 Hb_020378_030 Hb_007747_040--Hb_020378_030 Hb_001814_030 Hb_001814_030 Hb_007747_040--Hb_001814_030 Hb_001268_280 Hb_001268_280 Hb_007747_040--Hb_001268_280 Hb_003362_070 Hb_003362_070 Hb_004935_030--Hb_003362_070 Hb_000083_160 Hb_000083_160 Hb_004935_030--Hb_000083_160 Hb_003371_110 Hb_003371_110 Hb_004935_030--Hb_003371_110 Hb_000457_260 Hb_000457_260 Hb_004935_030--Hb_000457_260 Hb_001617_060 Hb_001617_060 Hb_004935_030--Hb_001617_060 Hb_007576_110 Hb_007576_110 Hb_004935_030--Hb_007576_110 Hb_008253_030 Hb_008253_030 Hb_001767_140--Hb_008253_030 Hb_002253_080 Hb_002253_080 Hb_001767_140--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_001767_140--Hb_002267_140 Hb_140049_040 Hb_140049_040 Hb_001767_140--Hb_140049_040 Hb_000174_060 Hb_000174_060 Hb_001767_140--Hb_000174_060 Hb_003866_080 Hb_003866_080 Hb_001767_140--Hb_003866_080 Hb_004668_060 Hb_004668_060 Hb_001377_160--Hb_004668_060 Hb_003120_080 Hb_003120_080 Hb_001377_160--Hb_003120_080 Hb_001377_160--Hb_000398_080 Hb_001377_160--Hb_003498_120 Hb_000139_130 Hb_000139_130 Hb_001377_160--Hb_000139_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.42925 13.3152 8.43879 9.32784 7.99801 14.4742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.14561 6.48358 6.3979 11.1911 8.01269

CAGE analysis