Hb_001946_350

Information

Type -
Description -
Location Contig1946: 293918-294754
Sequence    

Annotation

kegg
ID cit:102629469
description uncharacterized LOC102629469
nr
ID XP_012078750.1
description PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
swissprot
ID Q65KJ5
description Metallothiol transferase FosB OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46) GN=fosB PE=3 SV=1
trembl
ID A0A067KJD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13305 PE=4 SV=1
Gene Ontology
ID GO:0016829
description lactoylglutathione lyase glyoxalase i family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19429: 293894-294612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_350 0.0 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
2 Hb_005725_200 0.2464864155 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
3 Hb_000215_370 0.2597080109 - - myoinositol oxygenase, putative [Ricinus communis]
4 Hb_000025_170 0.2659555399 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000088_220 0.2694148649 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
6 Hb_005725_150 0.2743903118 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
7 Hb_003399_100 0.2772117861 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
8 Hb_000260_650 0.2810809601 - - PREDICTED: protein PFC0760c [Jatropha curcas]
9 Hb_000086_670 0.2877944213 - - PREDICTED: probable DNA helicase MCM9 [Jatropha curcas]
10 Hb_000349_230 0.2915749986 - - PREDICTED: protein TPX2 [Jatropha curcas]
11 Hb_002259_200 0.292179097 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000222_030 0.2927901695 - - -
13 Hb_002007_280 0.2935493154 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
14 Hb_001195_180 0.2953150408 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
15 Hb_005901_030 0.2965072249 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
16 Hb_000679_120 0.2981722411 - - hypothetical protein POPTR_0018s01610g [Populus trichocarpa]
17 Hb_030627_070 0.2983441517 - - histone H4 [Zea mays]
18 Hb_000345_410 0.3014881134 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
19 Hb_000321_080 0.3039010734 - - histone H4 [Zea mays]
20 Hb_005162_130 0.3070646174 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001946_350 Hb_001946_350 Hb_005725_200 Hb_005725_200 Hb_001946_350--Hb_005725_200 Hb_000215_370 Hb_000215_370 Hb_001946_350--Hb_000215_370 Hb_000025_170 Hb_000025_170 Hb_001946_350--Hb_000025_170 Hb_000088_220 Hb_000088_220 Hb_001946_350--Hb_000088_220 Hb_005725_150 Hb_005725_150 Hb_001946_350--Hb_005725_150 Hb_003399_100 Hb_003399_100 Hb_001946_350--Hb_003399_100 Hb_005725_200--Hb_000088_220 Hb_000679_120 Hb_000679_120 Hb_005725_200--Hb_000679_120 Hb_000321_080 Hb_000321_080 Hb_005725_200--Hb_000321_080 Hb_032208_020 Hb_032208_020 Hb_005725_200--Hb_032208_020 Hb_044662_050 Hb_044662_050 Hb_005725_200--Hb_044662_050 Hb_002722_010 Hb_002722_010 Hb_000215_370--Hb_002722_010 Hb_002518_060 Hb_002518_060 Hb_000215_370--Hb_002518_060 Hb_000544_160 Hb_000544_160 Hb_000215_370--Hb_000544_160 Hb_079751_010 Hb_079751_010 Hb_000215_370--Hb_079751_010 Hb_000215_370--Hb_000025_170 Hb_000878_140 Hb_000878_140 Hb_000025_170--Hb_000878_140 Hb_003581_180 Hb_003581_180 Hb_000025_170--Hb_003581_180 Hb_000025_170--Hb_005725_150 Hb_007904_250 Hb_007904_250 Hb_000025_170--Hb_007904_250 Hb_001890_020 Hb_001890_020 Hb_000025_170--Hb_001890_020 Hb_032264_080 Hb_032264_080 Hb_000088_220--Hb_032264_080 Hb_000369_010 Hb_000369_010 Hb_000088_220--Hb_000369_010 Hb_004342_020 Hb_004342_020 Hb_000088_220--Hb_004342_020 Hb_006671_020 Hb_006671_020 Hb_000088_220--Hb_006671_020 Hb_000120_250 Hb_000120_250 Hb_000088_220--Hb_000120_250 Hb_000051_080 Hb_000051_080 Hb_005725_150--Hb_000051_080 Hb_003784_040 Hb_003784_040 Hb_005725_150--Hb_003784_040 Hb_010180_030 Hb_010180_030 Hb_005725_150--Hb_010180_030 Hb_001478_020 Hb_001478_020 Hb_005725_150--Hb_001478_020 Hb_002007_040 Hb_002007_040 Hb_005725_150--Hb_002007_040 Hb_006275_060 Hb_006275_060 Hb_005725_150--Hb_006275_060 Hb_002045_190 Hb_002045_190 Hb_003399_100--Hb_002045_190 Hb_030627_070 Hb_030627_070 Hb_003399_100--Hb_030627_070 Hb_003399_100--Hb_006275_060 Hb_003399_100--Hb_005725_150 Hb_010998_050 Hb_010998_050 Hb_003399_100--Hb_010998_050 Hb_089889_010 Hb_089889_010 Hb_003399_100--Hb_089889_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.554714 0 1.83652 0.497712 0.0508019 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.117586 0.369571 0.31801 0.534019 0

CAGE analysis