Hb_001946_360

Information

Type -
Description -
Location Contig1946: 297582-302578
Sequence    

Annotation

kegg
ID rcu:RCOM_0399180
description hypothetical protein
nr
ID XP_012087570.1
description PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
swissprot
ID Q9FFK6
description Nuclear pore complex protein NUP88 OS=Arabidopsis thaliana GN=NUP88 PE=1 SV=1
trembl
ID A0A067LKE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01279 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_360 0.0 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
2 Hb_005228_120 0.1210152307 - - phospholipase d beta, putative [Ricinus communis]
3 Hb_000317_080 0.1414615898 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
4 Hb_000395_140 0.1428111323 - - Oligopeptide transporter, putative [Ricinus communis]
5 Hb_002311_250 0.1465862428 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
6 Hb_130177_010 0.1517733871 - - hypothetical protein RCOM_0897890 [Ricinus communis]
7 Hb_001341_040 0.1541724245 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
8 Hb_002374_440 0.1542868318 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000827_080 0.1572063656 - - catalytic, putative [Ricinus communis]
10 Hb_000940_040 0.1581761105 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
11 Hb_005228_100 0.1588859832 - - -
12 Hb_000152_560 0.1632511353 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
13 Hb_004712_110 0.1649861213 - - 30S ribosomal protein S10, putative [Ricinus communis]
14 Hb_098315_110 0.1654835974 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000406_040 0.166473166 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
16 Hb_001357_190 0.1695879408 - - ribonuclease III, putative [Ricinus communis]
17 Hb_003327_030 0.1703524246 - - Hsc70-interacting protein, putative [Ricinus communis]
18 Hb_002814_120 0.1709914164 - - PREDICTED: uncharacterized protein LOC105633463 [Jatropha curcas]
19 Hb_003768_040 0.1736363437 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_006816_120 0.1736824535 - - Nicotianamine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001946_360 Hb_001946_360 Hb_005228_120 Hb_005228_120 Hb_001946_360--Hb_005228_120 Hb_000317_080 Hb_000317_080 Hb_001946_360--Hb_000317_080 Hb_000395_140 Hb_000395_140 Hb_001946_360--Hb_000395_140 Hb_002311_250 Hb_002311_250 Hb_001946_360--Hb_002311_250 Hb_130177_010 Hb_130177_010 Hb_001946_360--Hb_130177_010 Hb_001341_040 Hb_001341_040 Hb_001946_360--Hb_001341_040 Hb_000940_040 Hb_000940_040 Hb_005228_120--Hb_000940_040 Hb_000173_210 Hb_000173_210 Hb_005228_120--Hb_000173_210 Hb_000540_140 Hb_000540_140 Hb_005228_120--Hb_000540_140 Hb_000827_080 Hb_000827_080 Hb_005228_120--Hb_000827_080 Hb_000608_340 Hb_000608_340 Hb_005228_120--Hb_000608_340 Hb_001268_230 Hb_001268_230 Hb_000317_080--Hb_001268_230 Hb_098315_110 Hb_098315_110 Hb_000317_080--Hb_098315_110 Hb_053543_010 Hb_053543_010 Hb_000317_080--Hb_053543_010 Hb_000987_050 Hb_000987_050 Hb_000317_080--Hb_000987_050 Hb_004648_040 Hb_004648_040 Hb_000317_080--Hb_004648_040 Hb_001628_110 Hb_001628_110 Hb_000317_080--Hb_001628_110 Hb_001357_190 Hb_001357_190 Hb_000395_140--Hb_001357_190 Hb_006029_010 Hb_006029_010 Hb_000395_140--Hb_006029_010 Hb_002675_190 Hb_002675_190 Hb_000395_140--Hb_002675_190 Hb_000771_160 Hb_000771_160 Hb_000395_140--Hb_000771_160 Hb_000208_290 Hb_000208_290 Hb_000395_140--Hb_000208_290 Hb_000161_030 Hb_000161_030 Hb_000395_140--Hb_000161_030 Hb_011457_160 Hb_011457_160 Hb_002311_250--Hb_011457_160 Hb_011344_010 Hb_011344_010 Hb_002311_250--Hb_011344_010 Hb_002374_440 Hb_002374_440 Hb_002311_250--Hb_002374_440 Hb_002239_040 Hb_002239_040 Hb_002311_250--Hb_002239_040 Hb_009680_030 Hb_009680_030 Hb_002311_250--Hb_009680_030 Hb_130177_010--Hb_098315_110 Hb_010931_110 Hb_010931_110 Hb_130177_010--Hb_010931_110 Hb_130177_010--Hb_006029_010 Hb_000300_540 Hb_000300_540 Hb_130177_010--Hb_000300_540 Hb_010368_070 Hb_010368_070 Hb_130177_010--Hb_010368_070 Hb_130177_010--Hb_000987_050 Hb_001341_040--Hb_011344_010 Hb_000733_060 Hb_000733_060 Hb_001341_040--Hb_000733_060 Hb_000768_030 Hb_000768_030 Hb_001341_040--Hb_000768_030 Hb_001341_040--Hb_000161_030 Hb_001341_040--Hb_006029_010 Hb_002997_100 Hb_002997_100 Hb_001341_040--Hb_002997_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.48846 3.6037 1.52658 1.11641 29.8008 8.44106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.582 2.01007 4.97359 4.2106 1.04798

CAGE analysis