Hb_001948_060

Information

Type -
Description -
Location Contig1948: 61576-63324
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14550g
description hypothetical protein
nr
ID XP_012077799.1
description PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
swissprot
ID Q8LE52
description Glutathione S-transferase DHAR3, chloroplastic OS=Arabidopsis thaliana GN=DHAR3 PE=1 SV=1
trembl
ID A0A067KAA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13436 PE=4 SV=1
Gene Ontology
ID GO:0016491
description dehydroascorbate reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001948_060 0.0 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
2 Hb_020479_010 0.0012408158 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
3 Hb_003266_110 0.0028227356 - - ATP binding protein, putative [Ricinus communis]
4 Hb_187418_010 0.0036899353 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
5 Hb_137288_010 0.0037520729 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
6 Hb_000003_800 0.0047040785 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001322_060 0.0047216419 - - unnamed protein product [Vitis vinifera]
8 Hb_001504_200 0.0083478274 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
9 Hb_004712_120 0.0106781655 - - Pectinesterase U1 precursor, putative [Ricinus communis]
10 Hb_003549_110 0.0108702946 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
11 Hb_000413_090 0.011101982 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
12 Hb_001571_070 0.014282641 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
13 Hb_002391_260 0.0151188806 - - hypothetical protein RCOM_0017280 [Ricinus communis]
14 Hb_001817_200 0.0169981974 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
15 Hb_001728_090 0.0188090059 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
16 Hb_002986_150 0.0211962411 - - hypothetical protein glysoja_022060 [Glycine soja]
17 Hb_002259_100 0.0240067695 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
18 Hb_004645_060 0.0289236062 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
19 Hb_004994_270 0.030554011 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
20 Hb_014549_030 0.0313849676 - - receptor-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001948_060 Hb_001948_060 Hb_020479_010 Hb_020479_010 Hb_001948_060--Hb_020479_010 Hb_003266_110 Hb_003266_110 Hb_001948_060--Hb_003266_110 Hb_187418_010 Hb_187418_010 Hb_001948_060--Hb_187418_010 Hb_137288_010 Hb_137288_010 Hb_001948_060--Hb_137288_010 Hb_000003_800 Hb_000003_800 Hb_001948_060--Hb_000003_800 Hb_001322_060 Hb_001322_060 Hb_001948_060--Hb_001322_060 Hb_020479_010--Hb_187418_010 Hb_020479_010--Hb_003266_110 Hb_020479_010--Hb_137288_010 Hb_020479_010--Hb_000003_800 Hb_020479_010--Hb_001322_060 Hb_003266_110--Hb_137288_010 Hb_003266_110--Hb_000003_800 Hb_003266_110--Hb_001322_060 Hb_003266_110--Hb_187418_010 Hb_001504_200 Hb_001504_200 Hb_187418_010--Hb_001504_200 Hb_004712_120 Hb_004712_120 Hb_187418_010--Hb_004712_120 Hb_003549_110 Hb_003549_110 Hb_187418_010--Hb_003549_110 Hb_137288_010--Hb_000003_800 Hb_137288_010--Hb_001322_060 Hb_000413_090 Hb_000413_090 Hb_137288_010--Hb_000413_090 Hb_000003_800--Hb_001322_060 Hb_000003_800--Hb_000413_090 Hb_001322_060--Hb_000413_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.401843 0.180955 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis