Hb_001950_100

Information

Type -
Description -
Location Contig1950: 58780-62944
Sequence    

Annotation

kegg
ID rcu:RCOM_1153510
description LIM domain kinase, putative (EC:1.3.1.74)
nr
ID XP_012079309.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
swissprot
ID C0LGS3
description Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1
trembl
ID A0A067KI93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12456 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g37250

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19464: 61966-62634
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001950_100 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
2 Hb_000622_030 0.0951386938 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
3 Hb_000023_180 0.0999667279 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
4 Hb_001232_040 0.1008664853 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
5 Hb_000000_290 0.1014064973 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
6 Hb_005725_160 0.1030644857 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
7 Hb_002168_070 0.117942574 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
8 Hb_001158_250 0.1193144983 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005329_030 0.1260173987 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
10 Hb_001305_020 0.1274123357 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
11 Hb_005790_010 0.129075205 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
12 Hb_003488_040 0.129810142 transcription factor TF Family: NF-YB nuclear transcription factor YB7 [Populus nigra x Populus x canadensis]
13 Hb_019925_020 0.1304497572 - - electron carrier, putative [Ricinus communis]
14 Hb_002835_070 0.1320426717 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002973_050 0.1326699814 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
16 Hb_000856_030 0.1350348477 - - ATP binding protein, putative [Ricinus communis]
17 Hb_005723_090 0.1350539134 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000000_050 0.1353604278 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002043_070 0.1367290187 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
20 Hb_005183_100 0.138318108 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]

Gene co-expression network

sample Hb_001950_100 Hb_001950_100 Hb_000622_030 Hb_000622_030 Hb_001950_100--Hb_000622_030 Hb_000023_180 Hb_000023_180 Hb_001950_100--Hb_000023_180 Hb_001232_040 Hb_001232_040 Hb_001950_100--Hb_001232_040 Hb_000000_290 Hb_000000_290 Hb_001950_100--Hb_000000_290 Hb_005725_160 Hb_005725_160 Hb_001950_100--Hb_005725_160 Hb_002168_070 Hb_002168_070 Hb_001950_100--Hb_002168_070 Hb_001158_250 Hb_001158_250 Hb_000622_030--Hb_001158_250 Hb_001305_020 Hb_001305_020 Hb_000622_030--Hb_001305_020 Hb_005723_090 Hb_005723_090 Hb_000622_030--Hb_005723_090 Hb_000622_030--Hb_000000_290 Hb_000622_030--Hb_001232_040 Hb_005183_100 Hb_005183_100 Hb_000622_030--Hb_005183_100 Hb_000023_180--Hb_000000_290 Hb_005391_050 Hb_005391_050 Hb_000023_180--Hb_005391_050 Hb_002835_070 Hb_002835_070 Hb_000023_180--Hb_002835_070 Hb_005329_030 Hb_005329_030 Hb_000023_180--Hb_005329_030 Hb_001976_100 Hb_001976_100 Hb_000023_180--Hb_001976_100 Hb_001232_040--Hb_001158_250 Hb_000271_130 Hb_000271_130 Hb_001232_040--Hb_000271_130 Hb_001232_040--Hb_000000_290 Hb_001232_040--Hb_005723_090 Hb_000000_290--Hb_005183_100 Hb_000000_290--Hb_005723_090 Hb_000000_290--Hb_002835_070 Hb_016277_030 Hb_016277_030 Hb_000000_290--Hb_016277_030 Hb_005725_160--Hb_001232_040 Hb_009222_080 Hb_009222_080 Hb_005725_160--Hb_009222_080 Hb_003097_220 Hb_003097_220 Hb_005725_160--Hb_003097_220 Hb_005725_160--Hb_000622_030 Hb_005725_160--Hb_002168_070 Hb_009771_040 Hb_009771_040 Hb_002168_070--Hb_009771_040 Hb_002043_070 Hb_002043_070 Hb_002168_070--Hb_002043_070 Hb_000434_060 Hb_000434_060 Hb_002168_070--Hb_000434_060 Hb_002053_190 Hb_002053_190 Hb_002168_070--Hb_002053_190 Hb_001405_170 Hb_001405_170 Hb_002168_070--Hb_001405_170 Hb_005211_210 Hb_005211_210 Hb_002168_070--Hb_005211_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.121797 3.78305 1.56826 9.59552 0.00750365 0.190881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0272828 0.892934 8.12182

CAGE analysis